Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq944 149 7e-31 seq3112 93.3 5e-14 >seq944 Length=39427 Score = 149 bits (164), Expect = 7e-31 Identities = 382/575 (66%), Gaps = 14/575 (2%) Strand=Plus/Minus Query 175279 GCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTC 175338 ||||||||||| ||||| ||| | | ||| ||||| || || ||||| || ||| Sbjct 22273 GCCAAGATCCCACGAGGTATCCTGATGGTGGGACCTCCAGGAACTGGTAAGACTCTACTC 22214 Query 175339 GCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTT 175398 ||| |||| |||| || || | || ||||| || |||| | | ||| Sbjct 22213 GCCAGAGCAGTCGCAGGAGAGAGTGAAGTACCATTTTTCTCTATATCTGGATCTGAGTTT 22154 Query 175399 GTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGC 175458 || ||||||||||| ||||||||||| | || || ||||||||| || || Sbjct 22153 GTCGAGATGTTTGTCGGTGTGGGTGCTGCTCGTGTCCGAGATCTCTTTCGTGAGGCTCGT 22094 Query 175459 GAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGC 175518 ||| || |||| || | || || || ||||| ||||| | || || | || | | Sbjct 22093 GAACATGCTCCATCGATCATATTTATCGACGAGATCGATGCTATAGGGAAAAAGCG-ATC 22035 Query 175519 GCTGGTGGTATGCCAGC---AAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 || |||||| || | |||| ||| ||||||| || | ||||| ||||||| Sbjct 22034 GCC--TGGTATCGGAGGTGGACATGATGAGCGAGAACAGACTCTCAATCAGATACTCACG 21977 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTG---GTTATTGCGGCCACTAATCGC 175632 ||||||||||| |||||||||||||| || |||| | || || || || ||||| Sbjct 21976 GAGATGGATGGATTTGACAATGAGAC---CAATGTGATCATCATGGCAGCGACCAATCGT 21920 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGTG 175692 | ||| |||| ||| ||||| || || || || || |||||||||||| | | | Sbjct 21919 GCTGATGTCCTCGATAGTGCCCTACTCCGACCAGGACGATTTGATCGCAAGGT-GACGAT 21861 Query 175693 GGTCTT-CCAAGTGTGCGAGGTCGCAAGAAGATTTTGGGAGTCCATGCCCGAGACAAGAA 175751 ||| || | | | || ||| || ||||| | | |||||||||| || ||| Sbjct 21860 CAACTTACCCACTCTCGAAGATCGTAAAAAGATCCTCGAAGTCCATGCCAAAGGAAAGCC 21801 Query 175752 GTTATCTGAAGATGTCAGTCTCGCGAGTATTGCCAAGCAAACAACTGGATTCTCTGGTGC 175811 || |||| |||||||| | |||| || || | ||||| |||||||| Sbjct 21800 TTTTGCTGATGATGTCAGATGGGATCGTATCGCTGGTATCACGATCGGATTTTCTGGTGC 21741 Query 175812 GGAGTTGGCAAACCTTCTCAATGAATGTGCGATCC 175846 ||| | | ||| || |||||||| | || |||| Sbjct 21740 TGAGCTCGGAAATCTCCTCAATGAGTCGGCTATCC 21706 >seq3112 Length=23135 Score = 93.3 bits (102), Expect = 5e-14 Identities = 291/446 (65%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 ||||||| || | || ||| | || ||||| || |||||||| ||||| ||| | Sbjct 5348 CCGAGCGGCTAGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAG 5407 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTA 65194 | || | ||| ||||||| || || ||| |||| || || ||| ||||| || | Sbjct 5408 CGATATTCTGGATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCA 5467 Query 65195 TTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTA 65254 | || || ||||| || || || || |||||| ||||| || || | Sbjct 5468 TCTCTCGCGATGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAACACATGAAGA 5527 Query 65255 ATAGACCCAC--TACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAA 65312 | | ||| || | | ||| | || | ||||| || || || ||||| | Sbjct 5528 ACAAACCTACCGTGGCCAAAGTG--CATGAAATCGTTGCCGAAGCTGTGCTCATTGAACA 5585 Query 65313 AGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTC 65372 | ||| | || || || || |||| ||| || || ||||||| || ||||| Sbjct 5586 GGAATTCCTACGCGATGCCCTTCCTTGTAGTCTGATTGGAATGAACTGCAAGTTGATGTG 5645 Query 65373 CGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCAT-TT 65431 |||||||||| | |||| | |||||||| || | | || ||||| | || Sbjct 5646 TCAGTACATTGAATTTGTGGCCGATCGTCTGCTGGTGGA-GCTGTCGTGCCCAAAGTATT 5704 Query 65432 GGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACT 65491 ||||| | | ||| || |||||||||||||| || ||| || || ||||| || |||| Sbjct 5705 GGAACTCTACGAACCCCTTTGACTTTATGGAGAATATTTCACTGGAAGGGAAAACAAACT 5764 Query 65492 TCTTTGAGAAGCGAGTTGGGGACTAT 65517 | || || | || |||||||||||| Sbjct 5765 TTTTCGAAAGACGTGTTGGGGACTAT 5790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596524297996000