Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5171 129 1e-24 seq1961 95.1 2e-14 >seq5171 Length=25613 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTAT 192361 ||| | |||||||||||| | | || | ||| | || | || |||| || ||||| | Sbjct 8012 AATGAGACCACCTCTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGA-ATATTGT 8070 Query 192362 AATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGAT 192421 ||||||||| |||| |||| || | |||||| || || |||||||||| ||| |||| Sbjct 8071 AATCAGATAGAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGAT 8130 Query 192422 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG 192481 | || || || ||||| |||||||| || || ||| ||||| || | || || | Sbjct 8131 CTGGAGGAATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGG 8190 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| ||||||||||| | ||||| | ||| |||||||| Sbjct 8191 GCTCAACCTCGAGGGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCAT 8245 >seq1961 Length=16662 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || | | || ||||| | ||| | ||| || ||| || || || || Sbjct 7706 CCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 7765 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||| | | || |||||||| |||||||||||||| | | || ||||| || || Sbjct 7766 AGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGG 7825 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || ||||| || || |||| || || || || || | || || Sbjct 7826 ATACCCTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACC 7885 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| |||||||| | ||||| | ||| |||||||| Sbjct 7886 TCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984403372076250