Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5931 134 4e-26 seq976 132 1e-25 seq5757 111 5e-19 seq944 109 2e-18 >seq5931 Length=38538 Score = 134 bits (148), Expect = 4e-26 Identities = 203/286 (71%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| || ||||||||| | ||| || |||||||||||||| ||||| | ||||| || Sbjct 31083 CTGGATGTAACCAGTTTCGGCTGTCTTGACAGCTGTATCAATGAGACCTTCCCGACCGCC 31024 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| |||||||| | |||| || ||| || | | |||| | || ||||| Sbjct 31023 CATAGCGTGGAAGAAGAACTCTGATGGAGTTAGACCGGCCAGGTAGGAATTTTCTACGAA 30964 Query 302718 ACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 ||| | || |||||| || ||||||| || | | || || ||||||||||||| | Sbjct 30963 ACCTCTCGACTCGGGACCGTAATCGTC---CTGGATGAAATGCGGCAGGGTCCTGTGCCG 30907 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | || | || || || || || |||||||||||||| || | || | ||| | ||| Sbjct 30906 AAAACCAAACGGTATTCGTTTACCTTCAACGTTCTGCTGGCCGACACAAGCAATGACCTG 30847 Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATA 302880 ||||| || | | ||||||||||| || ||||||||| Sbjct 30846 AGAAATGTTGATACGGGAACCCTTGGAGCCGGCCACCACCATAATA 30801 >seq976 Length=29826 Score = 132 bits (146), Expect = 1e-25 Identities = 535/826 (65%), Gaps = 25/826 (3%) Strand=Plus/Minus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 |||||||||||||| || |||||| |||||||| ||||| || |||| | ||| Sbjct 23119 CTGTATTCTACAATTTCTGTGCACAGATTAGAACTACGAATGGTCCCCAAATGTTGCTGA 23060 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 || || || ||||| ||||| ||||| |||| |||||| | || || || || ||| Sbjct 23059 TTCGACTTTGAATTACAGGCATCTTTGTAGAGAACGTATGGATTACCAGTTTCGATTTGT 23000 Query 155748 GCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCC 155807 || || | ||| ||| | || || || || | | | | ||| || | || Sbjct 22999 GCATCAACAATTGCGTACCACAACTCCCGAGCCTTGAGTGTCCTCTTGCC-CTTCTTTTG 22941 Query 155808 GACT-CATATTTCATATACAGCGTTCGGTAATCCTCA--CCGTAACAATCACTCAGTCCA 155864 || |||||| | ||| || ||| | | | | || | ||||| |||||| Sbjct 22940 TTCTTCATATTGAAGATAGAG--TTCATTGAACTTTGGTCCCCAGCAATCTGCCAGTCCC 22883 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAA 155922 ||||| | || ||| | || | ||| | || || | ||||||||||| | Sbjct 22882 GGGCATTCATTTGGGTCCATCAATGTCCATTCCTCAT--CCTTCTCGACACGCTCCATGA 22825 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCAT-CGCCG 155981 ||| ||| ||||| |||||||| ||||| | || | | ||| || | | || Sbjct 22824 ATAAATCTGGTATCCAAAGGGCATAGAAGAGGTCACGAGC-TCTCACTTCTTCTGCACCA 22766 Query 155982 TGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATA 156041 ||| || | | ||| | || ||| || ||||| ||| || ||||| || Sbjct 22765 GTATTTTTTCTCATCTCGACAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATAAATG 22706 Query 156042 GCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAG 156098 |||||| ||| ||||| || || || || ||||| ||||| || ||||| ||| Sbjct 22705 GCAAAAGCTCCAGGTCTCTTATTACCTCCTTGGTCAACATAACGAGCGGTGTTATTAAAG 22646 Query 156099 ACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT--ATGCGAAC 156156 || | ||||| ||||| || ||||| || ||||| ||||| ||| ||||| | Sbjct 22645 ACTCTGAGCATGGGAATGATGCCATTCGATTCACCATTCGTTCCTGAAATGTATGCG--C 22588 Query 156157 CAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAG 156216 |||| ||||| | | || | | || ||||||||||| | |||||| || | | Sbjct 22587 CAGAGCCGCGAATAGTGTGCACACTGAGGCCAATACCACCAGCATTTTTAGAGATAAGGG 22528 Query 156217 CGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGAT 156276 | |||| || | ||| | | | || ||||||||| |||||| | ||||| || || Sbjct 22527 CACATTGTTTGAGAGTCTCGTATATGCCTTCAATACTATCATCATTCATTGTAAGGAGGA 22468 Query 156277 AGCA--CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 |||| | || | ||| || | || || || | ||| || || || || | || || Sbjct 22467 AGCAACTGGAC--ATTTGTGGCTGCGGAGTGCCCGAGTTAAAGAGGGTGGGAGACGCGTG 22410 Query 156335 AATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTT-CTCAAGATTAGACC 156393 | | || |||| | ||||||||| | ||| ||| | || ||| ||||| |||| | Sbjct 22409 AGTGAACAACTTTTCAGACATATACTTGTAGGTC-ATTAAAGCTTCCTCAACATTATCCA 22351 Query 156394 CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTC 156439 || || | | ||| || ||||| | | |||||||| | ||| Sbjct 22350 AATGGATGCCAAGAGAAACTCTCATTAATAGGTGCTGAGGCCTCTC 22305 >seq5757 Length=17208 Score = 111 bits (122), Expect = 5e-19 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTG-TAAGCATCAGATGCGTCATATAG 251462 ||||| ||||| ||| || |||||||| || ||| |||| ||| || ||| | || Sbjct 14094 GCGATGAGACCGCACAAGTTGCACACATGCAC-CTGATAAGGATCGGAGGCGAAGAAGAG 14036 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 | || || ||| ||| |||||| || | |||| ||||||||| ||||||||||| Sbjct 14035 TCTCTCCCTGAGGAATTGAGCTGCACCATGGGCAATCTGACAATCACGTTCCATTTCACC 13976 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| ||||| || ||||||||| | |||||| ||||| || |||| | | Sbjct 13975 GAAGCGAAGGCCGCCATCGCGACTACGACCCTCCATGGGCTGCCGGTTGAGGATTTGGAC 13916 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 |||||| || ||| || |||||||| ||||| ||||| ||||| |||||| | Sbjct 13915 GGGACCGCGGGCGCGCGAGTGGATCTTATCATCGACCATGTGCTTCAGACGTTGGTAGTA 13856 Query 251643 TGCGGGACCGATGAAGAT 251660 | || |||| ||| || Sbjct 13855 AGTAGGCCCGAGGAAAAT 13838 >seq944 Length=39427 Score = 109 bits (120), Expect = 2e-18 Identities = 280/417 (67%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| || | || ||||| || || ||||| | ||||||| | ||| Sbjct 21962 AAATCCATCCATCTCCGTGAGTATCTGATTGAGAGTCTGTTCTCGCTCATCATGTCCACC 22021 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | || ||| ||||| |||| || | |||||| || ||||| || || || Sbjct 22022 TCCGATACCAGGCGA-TCGCT-----TTTTCCCTATAGCATCGATCTCGTCGATAAATAT 22075 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | | |||| || || | || ||| | |||| ||||| | || || | Sbjct 22076 GATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGATCTCGGACACGAGCAGCACCCAC 22135 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT- 289176 ||| ||| |||| || ||||| ||||| | |||| | || | |||| ||| || || Sbjct 22136 ACCGACAAACATCTCGACAAACTCAGATCCAGATA-TAGAGAAAAATGGTAC-TTCACTC 22193 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || ||||| ||||| || || || || |||||||| ||||| || |||||| | | || Sbjct 22194 TCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGTTCCTGGAGGTCCCACCATCAGG 22253 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAATTC 289295 | || ||| | | ||| | ||| ||| ||||| ||| |||| | ||| || Sbjct 22254 ATACCTCGTGGGA-TCTTGGCTCAGAGTTCTTTGTATTTTGTAGGATTCTTGAGAAAGTC 22312 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| ||| || || || ||| |||||||| | || |||||||||||||| || Sbjct 22313 GACAACTTCTTCGAGATCTGCCTTTTCCTCATCAGAACCAGCTACATCAGCAAATGT 22369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471703039697275