Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4653 100 3e-15 seq3596 96.9 4e-14 >seq4653 Length=17293 Score = 100 bits (110), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1592130 CGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 |||||||| |||||| | ||||| ||| || || |||||||| || ||||||| Sbjct 1584 CGTGGGACGTTGAGTTTCTAAAGGTCGATCAGGGAACTCTGTTTGAGTTAATGCTCGCCG 1525 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||| ||||| ||||| || ||| |||||| | | ||||| || || || |||||| Sbjct 1524 CCAATTACCTTGACATTAAAGGTCTCCTCGATGTCTGTTGCAAATCGGTTGCTCACATGA 1465 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | || || || || ||||| || || | ||||| ||||| |||| || Sbjct 1464 TTAAAGGGAAATCTCCCGAAGATATTAGAAAGACGTTTAATATCACGT 1417 >seq3596 Length=2398 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| | | | || ||||| |||||||||||||| | ||| || Sbjct 601 GCTTGGCCAATTCACCGGGGAGAAGAAGACGCACAGCGGTCTGGATCTCTCTGCTGCTGA 542 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| | ||||| | | || | | |||| | || | | Sbjct 541 TGGTCGATCTCTTGTTGTAGTGAGAGAGACGACTTGATTCAGCGGCGATTCTCTCAAAGA 482 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||| ||||||| ||||| | |||| |||||| || ||| |||| Sbjct 481 TGTCGTTCACGAACGAATTCATGATTGACATGGCCTTGGAGGAGATACCAGTGTCTGGGT 422 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || | | ||||||||||||| Sbjct 421 GAACTTGTCTCAACACCTTGTAGATG 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106640657050775