Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3596 132 8e-25 seq3210 109 9e-18 seq1176 96.9 5e-14 >seq3596 Length=2398 Score = 132 bits (146), Expect = 8e-25 Identities = 178/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||| ||||| ||||| ||||| |||||||||||||| ||| |||||| ||| ||| Sbjct 643 CGGTGTATTTGGTTACGGCTTTGGTGCCCTCTGAGACGGCATGCTTGGCCAATTCACCGG 584 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--T 1485584 | | | || ||||| |||||||||||||| | | ||| ||| || | ||||| | Sbjct 583 GGAGAAGAAGACGCACAGCGGTCTGGATCTCTCTGCTGCTGATGGTCGATCTCTTGTTGT 524 Query 1485585 AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 |||| | | || || | | || | | |||| | || | |||||||| || ||||| Sbjct 523 AGTGAGAG--AGACGACTTGATTCAGCGGCGATTCTCTCAAAGATGTCGTTCACGAACGA 466 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||| ||||| | ||| |||||| || ||| ||||| || || | | ||| Sbjct 465 ATTCATGATTGACATGGCCTTGGAGGAGATACCAGTGTCTGGGTGAACTTGTCTCAACAC 406 Query 1485705 CTTGTA 1485710 |||||| Sbjct 405 CTTGTA 400 >seq3210 Length=6642 Score = 109 bits (120), Expect = 9e-18 Identities = 143/195 (73%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||| ||||| ||||| ||||| |||||||||||||| ||| |||||| ||| ||| Sbjct 6449 CGGTGTATTTGGTTACGGCTTTGGTGCCCTCTGAGACGGCATGCTTGGCCAATTCACCGG 6508 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--T 1485584 | | | || ||||| |||||||||||||| | | ||| ||| || | ||||| | Sbjct 6509 GGAGAAGAAGACGCACAGCGGTCTGGATCTCTCTGCTGCTGATGGTCGATCTCTTGTTGT 6568 Query 1485585 AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 |||| | | || || | | || | | |||| | || | |||||||| || ||||| Sbjct 6569 AGTGAGAG--AGACGACTTGATTCAGCGGCGATTCTCTC-AAGATGTCGTTCACGAACGA 6625 Query 1485645 GTTCATGATCGACAT 1485659 |||||||| ||||| Sbjct 6626 ATTCATGATTGACAT 6640 >seq1176 Length=9086 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||| || ||||| || || ||||||||||| ||| |||||| ||| ||| ||| | Sbjct 2287 TATTTGGTAACTGCCTTTGTGCCTTCTGAGACGGCATGCTTGGCCAATTCACCGGGCAAG 2346 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGTGC 1485589 | || || || ||||| ||||| || | | | | || || | ||||| ||||| Sbjct 2347 AGGAGACGGACAGCGGTTTGGATTTCTCTGCTACTAATGGTCGATCTCTTGTTGTAGTGG 2406 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | || || | || || | |||| | || | |||||||| || || || |||| Sbjct 2407 GAG--AGACGACTAGCTTCAGCTGCGATTCTCTCAAAGATGTCGTTAACGAAGGAATTCA 2464 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| |||||| || ||| || || || || | || ||||||| Sbjct 2465 TGATTGACATAGCCTTGGAGGAGATACCGGTGTCTGGATGAACTTGTCTCAGGACCTTGT 2524 Query 1485710 A 1485710 | Sbjct 2525 A 2525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915600174541925