Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1961 132 3e-26 seq5171 104 2e-17 >seq1961 Length=16662 Score = 132 bits (146), Expect = 3e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 ||| || || || | || ||||||| |||| ||| |||||| || ||||| ||||| Sbjct 7702 ATTGCCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTC 7761 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 || || | | | || |||| |||||| || || ||||| || |||||||| ||| | Sbjct 7762 GGAAAGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGG 7821 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926 || | ||||||||||| | || || ||||||| | ||||| || | | ||| Sbjct 7822 GGGGATACCCTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTC 7881 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAG 34982 ||| || | ||||||||||| || || || || ||||||||||||||||| |||| Sbjct 7882 GACCTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCATAATAG 7937 >seq5171 Length=25613 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||| || |||| ||| |||||| ||||| || || || ||||| | | || Sbjct 8031 CTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCA 8090 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||| |||||||||||||| | ||| ||||| ||| | || | || ||||| Sbjct 8091 TCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTA 8150 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940 || | || || |||||| || || |||| ||| || ||| || || | ||| | Sbjct 8151 TCTTGAATCTTGGCTTTGAC--ATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAA 8208 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || || || || || ||||| ||||||||| Sbjct 8209 TAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCATG 8246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325668686010425