Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq1154 114 6e-21 >seq1154 Length=36805 Score = 114 bits (126), Expect = 6e-21 Identities = 354/543 (65%), Gaps = 20/543 (4%) Strand=Plus/Plus Query 64686 GGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTG 64745 || ||||||||||| || | ||||| || || || || | | ||| || | | Sbjct 10591 GGATCTATCGCTCTCGATGATGCTCTCGGT---GGTGGCTATGCCAAGGGTCGTATCATA 10647 Query 64746 GAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAAT 64805 || ||||| || |||||||| || || ||| | |||||| || || || | || | Sbjct 10648 GAGATCTATGGTCCAGAATCCTCTGGTAAGACGACTCTGACACTTCATGCTATTGCTGAG 10707 Query 64806 GCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAG 64865 | || ||||| | || | || || | |||| || |||||| | || || |||| Sbjct 10708 GTACAAAAGGCATGAGGAACTGCAGCATTTGTCGATGCGGAGCACGCTCTCGATCCTGCC 10767 Query 64866 TACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGC 64925 || |||||| ||||||| | |||| | ||| | | |||||| ||| ||| Sbjct 10768 TATGCCAAGAGTATCGGTGTCAATATCGATGATCTCATCATCTCTCAGCCAGACTATGGT 10827 Query 64926 GAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCG--TCG 64983 ||||| || || ||||| || || |||||| ||| || |||||| ||| ||| Sbjct 10828 GAGCAAGCTCTCGAGATAGTCGATGCACTCGTCCGGTCAGG--AGCTGTGGATCTCATCG 10885 Query 64984 TCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACA 65043 |||||||||||||||| || || || || ||| |||| || | || || || | Sbjct 10886 TCGTTGACTCTGTGGCAGCACTCACCCCAAAGGCGGAGATCGAGGGAAATATGGGAGATA 10945 Query 65044 GTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCA 65103 || | || || || || || || ||||| ||||| | |||||| |||| || || Sbjct 10946 GTTTTATGGGACTCCATGCTCGTCTGATGTCTCAGGCTCTCCGCAAGGTCACGGGTGTCA 11005 Query 65104 TCTCCAGCACCAACAC-GCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 65162 || || ||||| | | | | | | |||||||| | || |||||||| Sbjct 11006 TCAACAAATCCAACTCAACAGTC-ATATTTATCAACCAGATCCGTATGAAGATCG----- 11059 Query 65163 GTGGGCTACGGCCCGAA----TGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 65218 | | || | | ||| |||||| || || || || || ||| ||| ||||||||| Sbjct 11060 --GAGTTATGTTCGGAAATCCTGAGACAACAACAGGAGGAAATGCTCTGAAGTTCTACGC 11117 Query 65219 CTC 65221 ||| Sbjct 11118 CTC 11120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237329627035825