Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2310 242 3e-58 seq4645 199 3e-45 seq5879 109 4e-18 seq3340 93.3 3e-13 >seq2310 Length=6049 Score = 242 bits (268), Expect = 3e-58 Identities = 944/1466 (64%), Gaps = 26/1466 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| || || ||||| || |||||||| | |||||| ||||| || ||||| ||||| Sbjct 2752 GCAGAAACGTTGAGAATGCCGTTGGCATCGATATCAAAAGTGACCTCGATTTGTGGGACA 2811 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| | ||||||| || || | | ||| | || || ||| || || || Sbjct 2812 CCTCTTGGGGCAGGTGCAATGCCAGAGAGCTCGAATTTACCAAGGAGATTGTTGTCCTTG 2871 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || |||||||| | | ||||| || | | || || || | || Sbjct 2872 GTCATGGCTCTCTCACCCTCATAGACCTGGATCAAGACACCTGGCTGGTTGTCAGCGTAG 2931 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || ||||| | | || ||| |||||| || | ||| || | || | | || Sbjct 2932 GTAGTAAAGGTTTGAGTTTGCTTAGTAGGAATGGTAGAGTTCCTCTTGATGAGGGAG-TC 2990 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | ||| ||||| || || | ||| | || || |||| |||||| | ||| | || Sbjct 2991 ATCACACCGCCAGCGGTCTCGAGACCCAATGAGAGTGGAGCGACATCGAGTAGTAGAAGG 3050 Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | | | | | || | | | || || || ||||| || | ||| |||||||| Sbjct 3051 TCTAGGA---TGTCGTGCTTGTCTCCCTTGAGGATGGCTGCCTGGACAGCGGCACCATAG 3107 Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 281845 || ||||||||||||||||| | | | || || | | | || ||||| || | | Sbjct 3108 GCTACAGCTTCATCAGGATTGATCGACTTGTTGAGCTCTCTTCCGTTGAAGAAGTCTTGC 3167 Query 281846 AGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 281904 ||||| | ||| | ||| |||||||||| ||| ||||| || || ||||| || || | Sbjct 3168 AGAAGCT-TCTGAATCTTTGGAATACGAGTTGAACCTCCGACCAACACAATGTCGTGGAT 3226 Query 281905 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAG--ACCAGC 281961 || | || |||| || | ||| || ||||| || |||| ||| |||| Sbjct 3227 CTTGGCCTTGTCCATGTTGGCATCTCTCAAGGACTTTTCGACTGGGTCCAATGTACCA-- 3284 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA-GAGTGACATTATAA- 282019 | |||||||| || || | |||||||| |||||| || | | || || || Sbjct 3285 -CGGAACAAGTCCGAGCACATCTCTTCGAAACGAGCTCTGGTGATGCTTGTG--TAGAAG 3341 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 |||| || || | | ||| |||| || || | | |||||| || || || | Sbjct 3342 TCAACACCGTCATAGAGAGAGTCAATCTCGATACTGGCTTGAGTGCTGGAGGAAAGGGTC 3401 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGATTCA 282137 | || || | || || || ||||| | |||| | ||| | ||| || | | | Sbjct 3402 CTCTTGGCTCTCTCGCAGGCAGTCCTCAACCTTCTAACGGCCCTCTTGTTGTCGG--TGA 3459 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCT-TCAACACACCATGTTACAAGACGATTATCA 282196 ||| | || | || |||||||| || | | | || |||||||| || || Sbjct 3460 TCTCTTTCTTGTGCTTCCTCTTGAACTCAGTGATGAAGTGATCG-ACAAGACGGTTGTCG 3518 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 |||||||| || || | | |||| |||| || | | | |||| || | ||||||| Sbjct 3519 AAATCTTCTCCACCGAGATGGGTATCACCTGCTGTCGATTTCACTTCAAAGATTCCATCT 3578 Query 282257 TCAA--GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 |||| |||| | ||| |||||| || |||||||| | |||||| || || || | Sbjct 3579 TCAATCGAGAGGACGGAG--ACATCAAATGTACCACCACCGAGATCAAAGATGAGAACGT 3636 Query 282315 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 || | || || | || || || | ||| || || | ||| || ||||| ||||| | Sbjct 3637 TCCTCTCAGTGCCGACCTTCTTGTCCAAACCGTAAGCGATAGCTGCGGCAGTGGGTTCGT 3696 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 | || |||||||| || || | ||||||||| |||||||||||||| |||||||| | Sbjct 3697 TGATGATTCTCAACACGTTGATACCAGCAATGACACCTGCATCTTTAGTAGCTTGTCTCT 3756 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATAT 282494 | || || || || ||||| || || | || ||||||| || ||||| | | Sbjct 3757 GACTGTCATTGAAGTAGGCAGGGACGGTTACGACTGCATCTGACACAGTCTTTCCGAGGT 3816 Query 282495 AAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAAT 282554 | || ||||| | ||||| || | || | ||| || || | ||| || | Sbjct 3817 AGGCCTCAGCTGTCTCCTTCATCTTGATCAAGACCATGGAGCTGATCTCTTCAGGGAAGA 3876 Query 282555 ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | | ||| ||| | || || | | | ||| | | | |||| || Sbjct 3877 ACTCTTTGTCCTCACCCTTGTACTGGACGACGATCTTGGGTCTGGTGTCCTTGTTAACAA 3936 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 || | |||||||||| |||||||| ||||||||| ||| | || | ||| || | Sbjct 3937 CTCTGAATGGCCAATGCTTCATATCAGATTGAACATAGGAGTCGTCGAACTTTCTTCCGA 3996 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | || || || ||||| || | || |||||||| || | || |||| | ||||| | Sbjct 3997 TCAAACGCTTGGCATCGAAGACGGTGTTGGTTGGGTTCATGGCGACTTGGTTCTTGGCAG 4056 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 || || |||| |||||| || || || ||| || |||||||| || | || | Sbjct 4057 AGTCACCGATCAACCTTTCTGTATCGGTGAAACCAACGTACGATGGAGTGGTTCTGTTGC 4116 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | || || || ||||| ||||| || || |||| ||| | ||||| || || | | Sbjct 4117 CCTGGTCGTTGGCAATGATTTCTACCTTGCCATGTTGGAAGACACCAACGCATGAGTAGG 4176 Query 282855 TTGTTCCTAAATCAATACCAATAGCA 282880 |||| || | |||||| || || ||| Sbjct 4177 TTGTACCGAGATCAATTCCGATTGCA 4202 >seq4645 Length=15971 Score = 199 bits (220), Expect = 3e-45 Identities = 443/659 (67%), Gaps = 12/659 (2%) Strand=Plus/Minus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||| ||||| ||||| ||||| | ||| | || |||||| | || | || | || Sbjct 5906 ATCGAAATCCTCACCACCCAAGTGAGTGTCACCATTTGTAGCTATAACCTCAAAGACACC 5847 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 | |||| | | || | |||||| || |||||||||| ||| |||| || | Sbjct 5846 GTTGTCAATTGTAAGGAGGGAGACATCAAAAGTACCACCACCCAAATCGAAAACGAGAAT 5787 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 |||| | ||| || | |||| || | || || || | ||| || ||||| ||||| Sbjct 5786 ATTCTTCTCTCCCTCCT---TTTTGTCTAAGCCGTAGGCGATAGCTGCTGCAGTAGGTTC 5730 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 |||||| ||||| | ||||| ||||||| |||| | || ||||| || || ||||| | Sbjct 5729 ATTAATGATTCTAAGGACATTGAGACCAGAAATTGTACCGGCATCCTTTGTAGCTTGACG 5670 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492 ||| | |||||||| || || || ||||| | ||| |||| || || | ||||||| Sbjct 5669 TTGAGCGTCGTTAAAGTAGGCTGGGACAGTTACAACAGCATGAGTGACCTTCTTTCCAAG 5610 Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC--TGGA 282550 || || || ||| ||||||||||| | || ||||| || |||| || || Sbjct 5609 GTATGCTTCAGCGATTTCCTTCATTTTACTAAGAACCATTGCGGAGATTTCCTCAGGGGC 5550 Query 282551 GAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 |||||| ||| ||| | || | ||||||| ||| || | || Sbjct 5549 GAATAT--CTTTTTCTCACTGCCGACGCTA-ACTTCAATTGTTGGCTTTCCATTTTTATC 5493 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 ||| ||||| |||| || |||| ||| | ||| ||| ||| || | ||| ||| Sbjct 5492 AATGACTTTGTATGGGAGATGCTTCAAATCAGCTTGGACAGTTTTATCGTCAAATGTTCT 5433 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| | |||||| | ||||| | ||||| |||||| || ||||| ||| Sbjct 5432 ACCAATGATACGTTTTACGTCAAAGACTGTATTCTCTGGATTGGATGTCAATTGATTTTT 5373 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCT---GTAAATGAAACATATGATGGAGTTGT 282786 || || || ||||| ||| |||| ||| || || | |||||||||||||| | Sbjct 5372 TGCAGCGTCACCAATGAGACGTTCACCTTCTAGGGTGAAAGCGACATATGATGGAGTGAT 5313 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 |||||||| ||||| || |||||||||||||| |||| || | ||||| |||| Sbjct 5312 ACGATTACCCTGATCGTTGGCAATAATTTCAACACGACCACCTTTAAAGACACCGACAC 5254 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 |||| ||||| || | |||||||||||| ||||||||||| ||| |||| |||| | || Sbjct 5763 CTAAGCCGTAGGCGATAGCTGCTGCAGTAGGTTCATTAATGATTCTAAGGACATTGAGAC 5704 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | | |||| || | | ||| || ||||| | || ||||| ||||| || ||||| | Sbjct 5703 CAGAAATTGTACCGGCATCCTTTGTAGCTTGACGTTGAGCGTCGTTAAAGTAGGCTGGGA 5644 Query 86234 CAGTAATAACTGC 86246 |||| | ||| || Sbjct 5643 CAGTTACAACAGC 5631 >seq5879 Length=52658 Score = 109 bits (120), Expect = 4e-18 Identities = 415/649 (64%), Gaps = 23/649 (4%) Strand=Plus/Plus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||||||||| || ||||| | || | || || | ||||| |||| | | Sbjct 26825 ATCAAAATCTTCTCCGCCCAAATGCGTGTCACCACTAGTTGAGACTACTTCAAAAACTTC 26884 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 || |||| | ||| || | |||||| || || ||||||| ||| |||| ||| | Sbjct 26885 TTCGTCAATGGCCAAGAGGGAGACATCAAAAGTACCGCCACCCAGATCGAAAACAAGGAT 26944 Query 282313 ATTCATTTCTTTGTC-------TTGGTTT-----------TTATCAAGACCATACGCAAA 282354 | | |||| || | ||||| | || ||||| ||||| || | Sbjct 26945 CTGCTTTTCCTTAGCCTTTCCATTGGTATCTCTAACCTTCTTGTCAAGGCCATAGGCGAT 27004 Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 |||||| || || || ||||| |||||||| | | ||| ||||||||||| |||| || Sbjct 27005 AGCAGCTGCTGTGGGCTCATTGATAATTCTAAGGATATTTAGACCAGCAATCTTTCCAGC 27064 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 |||||||| |||||||| | || ||||| || || || || || | |||||||| Sbjct 27065 GGTCTTAGTGGCCTGTCTTTGGGCGTCATTAAAGTAGGCTGGGACTGTTACAACGGCATG 27124 Query 282475 TGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGA 282534 || |||| |||| | |||| || | | ||||||||| | || | ||| | Sbjct 27125 GGTGACTTTGGTTCCCAGATAATTTTCAGCGATATCTTTCATTTTTGTCAAGACCATGGC 27184 Query 282535 TGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGG 282594 ||||| | || |||| | | || ||| | || | ||||| || | |||| Sbjct 27185 GGAAATCTCCTCAGGAGCAAAGAATTTCTCTTCTTCTTTAACGTTTACTTTAATAAATGG 27244 Query 282595 TTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG 282654 |||| | | || || | ||||| ||| ||| | |||| || | | ||| Sbjct 27245 CCGATTATCTCTGTCAACCACATCGAATGGGAAATGTTTGAGATCTTTCTGGAGAATTTC 27304 Query 282655 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAC 282714 ||||| || || || || || || || |||| || | || || | | ||| Sbjct 27305 ATCATTCCAAGGCCTTCCGATGAAACGCTTGACATCGAATACGGTGTTCTTGTGGTTAGT 27364 Query 282715 TG-CAGCTTGATATTTGGCTGCATCTCCAATCAGA--TGTTCTGTC-TCTGTAAATGAAA 282770 || || | |||| || || | || ||||| | | |||| || | || |||| | Sbjct 27365 TGTCAAC-TGATTCTTTGCCGAGTCACCAATTAAACGAGTTCCTTCAGCCGTGAATGCCA 27423 Query 282771 CATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAAC 282819 |||| ||||| || | ||||||||||| ||||| || || || || || Sbjct 27424 CATAGGATGGTGTGATACGATTACCTTGCTCATTAGCTATGATCTCTAC 27472 >seq3340 Length=33557 Score = 93.3 bits (102), Expect = 3e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||||| | || || || || || || |||| ||| ||||| ||||||||||| |||| | Sbjct 25952 TTGTCGTCATTCTTCTCTAGGCCGTAGGCAAGAGCGGCAGCTGTTGGTTCATTTATAACT 25893 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 || | ||| | || || |||||| || ||||||||||| || || | || ||| Sbjct 25892 CTAAGAACCTCGAGGCCTGCAATTTGACCGGCATCTTTAGTCGCCTGGCGCTGGCTGTCG 25833 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||||| || || || ||||| | |||||||| Sbjct 25832 TTAAAGTAAGCTGGGACAGTGACAACGGCAT 25802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740332143172950