Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5171 163 6e-35 seq1961 140 6e-28 >seq5171 Length=25613 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || ||||| |||||||||||| |||| || ||||| |||||| Sbjct 8043 TGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCAAGTTGT 8102 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| || ||||||| || || ||||||||||| || |||||||||||||||||||| Sbjct 8103 TTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTG 8162 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || ||||| ||| || || || || | || || || || || || Sbjct 8163 GCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGTA 8222 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || ||||| |||||||| Sbjct 8223 AGAGTTTTGACAAAAATCTGCAT 8245 >seq1961 Length=16662 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || ||||| || || || || || || || || || ||| |||| |||||| Sbjct 7721 AGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTTCCGTCT 7780 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| || ||||||||||| || | ||| |||||||| || || || ||||| ||| Sbjct 7781 TCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCCTTGTCT 7840 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| | ||| || || || |||| || | || || || || | ||||| ||| Sbjct 7841 TGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGTTATGGTC 7900 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || | || |||||||| |||||||| || Sbjct 7901 TTACCAGTAAGAGTTTTTACAAAGATCTGCATAAT 7935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981750778559425