Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5171 96.9 3e-15 seq2782 84.2 2e-11 >seq5171 Length=25613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| || || ||||||||||| | || || || || || Sbjct 8042 ATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCTGCCATCTTCAAGTTG 8101 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || || ||| | || | |||||||| || ||||| || |||||||| || ||||| Sbjct 8102 TTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 8161 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||| | |||||| | |||||| || |||| ||| | ||||| || || Sbjct 8162 GGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGTAATAGTTTTACCAGT 8221 Query 133637 CAGAGTTTTTACGAAAATCTGCATGG 133662 |||||||| || ||||||||||||| Sbjct 8222 AAGAGTTTTGACAAAAATCTGCATGG 8247 >seq2782 Length=65747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 116472 GCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGA 116531 |||||||||||| || || |||||||| || |||||| || | | || |||| Sbjct 44094 GCACGGCTTCCATGTTCATGAGTTTGGTGATTTGTCCAACGGTTGTATGACTGCTGGCGC 44035 Query 116532 ACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGG 116591 || ||||| ||| ||| || | ||||| | ||| | | | | || |||||||| Sbjct 44034 TCATTTCAATCCCTTTGGCAAGAAGCACGGTGGCCCCGTCTCAGAGGAACGCCACGTCGG 43975 Query 116592 TGACCTGGGCAACATTGAGGCCAAAG 116617 |||| ||||||||||||||||||||| Sbjct 43974 TGACTTGGGCAACATTGAGGCCAAAG 43949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483384090233000