Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5171 96.9 8e-15 seq1961 84.2 5e-11 >seq5171 Length=25613 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || ||||| || || | || || || |||||| Sbjct 8242 CAGATTTTTGTCAAAACTCTTACTGGTAAAACTATTACCCTCGAGGTTGAGCCCTCTGAC 8183 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||||||||| || ||||| ||| || || || Sbjct 8182 ACGATCGAGAATGTCAAAGCCAA-GATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCA 8124 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | |||||||||||||| || | |||||||| || ||| | | |||||||| | Sbjct 8123 GCGATTAATCTTCGCCGGAAAACAACTTGAAGATGGCAGAACTCTATCTGATTACAATAT 8064 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| || ||||| || || | |||||| || Sbjct 8063 TCAAAAGGAGTCAACCCTTCATCTCGTCCTCAGACTTAGA 8024 >seq1961 Length=16662 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || || || || || ||| | |||||||| || || ||| Sbjct 7848 AAGATTCAAGACAAGGAGGGTATCCCCCCAGATCAGCAACGTCTTATCTTTGCTGGTAAG 7789 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||| ||||| ||| | |||| |||||| |||| || ||||| |||||||| Sbjct 7788 CAATTGGAAGACGGAAGAACTCTTTCCGACTACAACATCCAAAAGGAGTCCACTCTTCA 7730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181728811870075