Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5171 111 1e-19 seq1961 89.7 5e-13 >seq5171 Length=25613 Score = 111 bits (122), Expect = 1e-19 Identities = 174/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 25156 TAGT-TTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCA 25214 |||| |||| ||||| || |||| | ||||| ||||| | || || ||| | || | Sbjct 8262 TAGTATTTCCATTAACCA---TGCAGATTTTTGTCAAAACTCTTACTGGTAAAACTATTA 8206 Query 25215 CGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAG 25274 | |||| || || || || || |||||| | || ||| || ||| ||||| | Sbjct 8205 CCCTCGAGGTTGAGCCCTCTGACACGATCGAGAATGTCAAAGCCAAGATTCAAGATAAGG 8146 Query 25275 AGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA 25334 | ||||| || || |||||||| || | || | || ||| |||||||| ||||||| | Sbjct 8145 AAGGTATTCCTCCAGATCAGCAGCGATTAATCTTCGCCGGAAAACAACTTGAAGATGGCA 8086 Query 25335 GAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGA 25394 ||| | | ||||||||||||||||| || || ||| ||||| | || | ||| | | Sbjct 8085 GAACTCTATCTGATTACAATATTCAAAAGGAGTCAACCCTTCATCTCGTCCTCAGACTTA 8026 Query 25395 GAGGAGG 25401 |||| || Sbjct 8025 GAGGTGG 8019 >seq1961 Length=16662 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233 ||||| | ||||||||||| | || || || | || || | || |||| |||||| Sbjct 7932 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCG-AGCCAAG 7874 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | |||||| | || ||| || ||| || || |||||||| || || ||||| Sbjct 7873 CGACTCGATCGAGAACGTCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAGATCA 7814 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | || || | | || || ||| | ||||| | |||| | | ||| ||||| Sbjct 7813 GCAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACTACAA 7754 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||| || ||||| ||||||| || | ||| | ||||| || || Sbjct 7753 CATCCAAAAGGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGCGGCAA 7703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445060600644000