Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3596 109 8e-18 seq3210 98.7 1e-14 seq1168 93.3 6e-13 >seq3596 Length=2398 Score = 109 bits (120), Expect = 8e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||||| |||||||| ||||| || |||||||| | || | |||| Sbjct 438 CTCCTCCAAGGCCATGTCAATCATGAATTCGTTCGTGAACGACATCTTTGAGAGAATCGC 497 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | | || | |||| || | | || ||||||| | || ||| ||| | ||||| Sbjct 498 CGCTGAATCAAGTCGTCTCTCTCACTACAACAAGAGATCGACCATCAGCAGCAGAGAGAT 557 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||| ||||| || | | | ||| ||| |||||| ||| |||||||| ||||| Sbjct 558 CCAGACCGCTGTGCGTCTTCTTCTCCCCGGTGAATTGGCCAAGCATGCCGTCTCAGAGGG 617 Query 725138 CACCA 725142 ||||| Sbjct 618 CACCA 622 >seq3210 Length=6642 Score = 98.7 bits (108), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||||| |||||||| ||||| || |||||||| | || | |||| | | || | Sbjct 6642 CCATGTCAATCATGAATTCGTTCGTGAACGACATCTT-GAGAGAATCGCCGCTGAATCAA 6584 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||| || | | || ||||||| | || ||| ||| | |||||||||||||| | Sbjct 6583 GTCGTCTCTCTCACTACAACAAGAGATCGACCATCAGCAGCAGAGAGATCCAGACCGCTG 6524 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || | | | ||| ||| |||||| ||| |||||||| |||||||||| Sbjct 6523 TGCGTCTTCTTCTCCCCGGTGAATTGGCCAAGCATGCCGTCTCAGAGGGCACCA 6470 >seq1168 Length=34885 Score = 93.3 bits (102), Expect = 6e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 2133580 ATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACG 2133639 |||||||||| ||||||||||| |||||||||||| | ||||| |||| | | | | Sbjct 25908 ATATTGACTTCTTCTCCATGTGTGAGCACCACCTGGTACCCTTCTACGGCCACGTCTCCA 25849 Query 2133640 TGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACA 2133699 | |||||| | ||| |||||| |||| || | || || || | || || ||||| | Sbjct 25848 TCGGCTACATCCCCAACGGCAAGGTCATTGGATTAAGTAAATTCGCTCGGATTGTCGAAA 25789 Query 2133700 TGTTTTC-CGACCGCTTCCAAGTACAGGAG 2133728 | ||||| ||| ||| ||||| | |||||| Sbjct 25788 TATTTTCACGA-CGCCTCCAACTCCAGGAG 25760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177225255084150