Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5171 120 3e-22 seq1961 95.1 1e-14 seq3112 82.4 8e-11 >seq5171 Length=25613 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| |||| | ||||| || || || || ||||||||||| ||||| || | Sbjct 8019 CCACCTCTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGAT 8078 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | || | || || || ||||| || || || || || ||||||||||| || || Sbjct 8079 AGAGTTCTGCCA-TCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGG 8137 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||| || |||||| || | ||||| || | || || Sbjct 8138 AATACCTTCCTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAAC 8197 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| |||||||| || | |||||| || ||||| ||||| Sbjct 8198 CTCGAGGGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCAT 8245 >seq1961 Length=16662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || |||||||||| | || | || || ||||| |||||||| |||||||||||| Sbjct 7703 TTGCCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 7762 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || || ||| || | || || || ||||| || | ||| |||||||| || Sbjct 7763 GAAAGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGG 7822 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || |||||||| || |||||| || | | |||| | || Sbjct 7823 GGGATACCCTCCTTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCG 7882 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| ||||| || | |||||| || || || ||||| Sbjct 7883 ACCTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 >seq3112 Length=23135 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 21420 CCTCTTG-TATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGT 21478 ||| ||| || || || || |||||||| || || |||||||| ||||| |||| ||| | Sbjct 5797 CCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATAT 5738 Query 21479 TTTTCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGC 21538 | | |||||| | ||| || || | | || || || || || ||||| Sbjct 5737 TCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGACAGCTCCACCA 5678 Query 21539 ACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACA 21598 || |||||| ||||| ||||||||||| |||||||| | ||| ||||| || | || Sbjct 5677 GCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCA 5618 Query 21599 GA 21600 || Sbjct 5617 GA 5616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505360021309000