Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq976 316 3e-81 >seq976 Length=29826 Score = 316 bits (350), Expect = 3e-81 Identities = 758/1136 (67%), Gaps = 24/1136 (2%) Strand=Plus/Minus Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 ||||| | |||||| | || || | || || || || |||||||| | | |||| || Sbjct 23353 ATAAAGGTATCTGCTAGACCTTGTATGCCGATTCCAATTGGTCTATGGCGCATATTGGAG 23294 Query 69145 CTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACT 69204 || ||||| || | |||||| | || ||||| |||| || || ||||| | Sbjct 23293 AGTTTAGCTTGAGGCAGTGGATAAAAGTTGATATCAATAACCTTGTTTAGATTCTTGGTG 23234 Query 69205 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGT-CCATCTATA---ACA 69258 | ||||| | | | |||| || ||| || || || | |||||| | ||| Sbjct 23233 ATGACTTTGGCAATCAACCTTAGCTTTTCAAAGTCGAAACTCTTGCCATCTGCACTGACA 23174 Query 69259 AACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA--ATTTGCAT 69316 || || | | || || || || || ||||| | ||||| || | || | Sbjct 23173 AAGGCTGGAAGGGAGATTGAGGCCAGGTTGCAGACTGCAATCTCATCAGGTGAACTG--T 23116 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 ||| || || ||||| || |||||| || || ||||||| || ||||||||| Sbjct 23115 ATTCTACAATTTCTGTGCACAGATTAGAACTACGAATGGTCCCCAAATGTTGCTGATTCG 23056 Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||| |||||||| || ||||| |||| | ||| |||||||||| || || | | Sbjct 23055 ACTTTGAATTACAGGCATCTTTGTAGAGAACGTATGGATTACCAGTTTCGATTTGTGCAT 22996 Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTT 69496 | | ||| | | ||| | ||| ||| || | | ||||| ||| | || || Sbjct 22995 CAACAATTGCGTACCACAACTCCCGAGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTT 22936 Query 69497 CATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATT 69556 ||||||| ||| || | ||| | |||||| ||| ||| ||| || |||| Sbjct 22935 CATATTGAAGATAGAGTTCATTGAACTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATT 22876 Query 69557 CATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGG 69616 ||||||| |||||||| ||| | ||||| | || || || | ||| |||| ||| | Sbjct 22875 CATTTGGGTCCATCAATGTCCATTCCTCATCCTTCTCGACACGCTCCATGAATAAATCTG 22816 Query 69617 GAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 | |||||||| || ||| ||||| || | | ||| |||||| || ||||||||| Sbjct 22815 GTATCCAAAGGGC-ATAGAAGAGGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTT 22757 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 | | |||| ||| | ||| || | |||||||||||| ||||| || || | || Sbjct 22756 CTCATCTCGACAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCT 22697 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || |||| ||||| ||||| || || | || | || ||||||||| ||||||| ||| Sbjct 22696 CCAGGTCTCTTATTACCTCCTTGGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAGC 22637 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGA 69855 || ||||| || ||||| |||| |||||| ||||| ||||| || || ||||| Sbjct 22636 ATGGGAATGATGCCATTCGATTCACCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGA 22577 Query 69856 ATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC 69915 ||| | | | || || || || || || |||||||||| || ||||| |||| Sbjct 22576 ATAGTGTGCACACTGAGGCCAATACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTG 22517 Query 69916 AATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGAC 69975 | || || ||||| || || || |||||||| |||| |||| || || || || ||| Sbjct 22516 AGAGTCTCGTATATGCCTTCAATACTATCATCATTCATTGTAAGGAGGAAGCAACTGGAC 22457 Query 69976 ATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTT 70035 ||||| | || ||| |||| ||||| | || ||||| |||||||||||| | ||| Sbjct 22456 ATTTGTGGCTGCGGAGTGCCCGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTT 22397 Query 70036 TCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTA---TATCCCACTGATGAATTCCT 70092 ||||| | ||||| || | |||| || | ||||| | ||| || || Sbjct 22396 TCAGACATATACTTGTAGGTCATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCA 22340 Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTT---ATTATTTATTTTC 70149 | | || | ||| || | |||||||| | || ||| || |||| | | || Sbjct 22339 AGAGAAACTCTCATTAATAGGTGCTGAGGCCTCTCATACGTCTTGCCGTTATATCTCTT- 22281 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 |||||||| ||||| || || || || || |||||||||||| ||||||||| Sbjct 22280 --GAGGTATGACTTTTCTAGGGTCTTGAATCCGAAATAGTTGTATTCAAAGTCTCT 22227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686856637863000