Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3112 113 4e-20 >seq3112 Length=23135 Score = 113 bits (124), Expect = 4e-20 Identities = 337/503 (67%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAA---AT-TCAAATGATTCTTTTGGAGAACGACT 44133 ||||| || |||||||| |||||||| || | || | | ||||| || || || Sbjct 5299 AAAGCCGATTGGGCCCTCAAATGGATCTCGGATATGAACTCAAACTTTTCC-GAGCGGCT 5357 Query 44134 TGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTG 44193 || || ||| | | || || ||||| ||||| || || || || || || ||||| || Sbjct 5358 AGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAGCGATATTCTG 5417 Query 44194 GTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGA 44253 | | |||||||| || | |||| || | || ||| |||||| | || ||| || Sbjct 5418 GATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCATCTCTCGCGA 5477 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCC 44313 ||||||| ||||| ||| ||||| || | | || | | | | ||| | || || Sbjct 5478 TGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAACACAT-GAAGA--ACAAACC 5534 Query 44314 TTCATGTAAGACAATTACA-GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATT-- 44370 | | || || | || || || |||| || || || || ||||| ||||| Sbjct 5535 TACC-GTGGCCAAAGTGCATGAAATCGTTGCCGAAGCTGTGCTCATTGAACAGGAATTCC 5593 Query 44371 TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAAT 44429 || | | | | || | |||| | | || |||||||| || | || |||| || | Sbjct 5594 TACG-CGATGCCCTTCCTTGTAG-TCTGATTGGAATGAACTGCAAGTT-GATGTGTCAGT 5650 Query 44430 ATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATAT-T 44488 | ||||||| | || |||||| | || |||| ||| ||| || | | | | Sbjct 5651 ACATTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCTGTCGTGCCCAAAGTATTGGAACT 5710 Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| || ||| ||||| |||||||| |||||||| ||||||| |||||||||||||| Sbjct 5711 CTACGAACCCC-TTTGACTTTATGGAGAATATTTCACTGGAAGGGAAAACAAACTTTTTC 5769 Query 44549 GAAAAACGCGTTGGAGAATATCA 44571 |||| ||| ||||| || ||||| Sbjct 5770 GAAAGACGTGTTGGGGACTATCA 5792 Score = 87.8 bits (96), Expect = 1e-12 Identities = 195/290 (67%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 43733 TGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACT 43792 |||||| | || ||||| || || || |||||||| | ||||| ||||| | | Sbjct 4886 TGGCAATTTTATAAAAAGGCTGTCGCCTCTTTTTGGACTGTTGAAGAGGTTGACATATCG 4945 Query 43793 AAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTT 43852 |||||| | |||||| | | ||| ||||| || ||| | || || Sbjct 4946 AAAGACCTCAAGCATTGGCAGGACCTCAAAGATGAAGAACGCCACTTTCTCTCGCATGTG 5005 Query 43853 TTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT-TGC 43911 |||| || || ||||| |||||||| || ||| |||||| | || |||| ||| Sbjct 5006 CTGGCCTTCTTCGCTGCTAGCGACGGAATCGTCCTCGAAAATCTCGTGGAAAGGTTCTGC 5065 Query 43912 GCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||| || | | || ||||| || || || || || ||||| ||||| || Sbjct 5066 -CAAGAGGTCAAGATTCCCGAAGCCAGAGCCTTCTACTCCTTCCAGATTGCAATAGAGAA 5124 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 ||||||||||||||||||| ||| ||||| || || ||||| | |||| Sbjct 5125 TATTCATTCGGAAATGTACTCTCTACTGATTGACACCTACATTAGCGATG 5174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426572730375