Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq944 149 8e-31 >seq944 Length=39427 Score = 149 bits (164), Expect = 8e-31 Identities = 382/575 (66%), Gaps = 14/575 (2%) Strand=Plus/Plus Query 11283 GGATCGCACATTCATTGAGAAGGTTTGCCAACTCCGCACCAGAGAATCCAGTTGTTTGCT 11342 |||| || | |||||||| || ||| | | ||| |||||||| ||||| | || Sbjct 21706 GGATAGCCGACTCATTGAGGAGATTTCCGAGCTCAGCACCAGAAAATCCGATCGTGATAC 21765 Query 11343 TGGCAATACTCGCGAGACTGACATCTTCAGATAACTTCTTGTCTCGGGCATGGACTCCCA 11402 || |||| | |||||||| |||| || ||| || |||||||||| | | Sbjct 21766 CAGCGATACGATCCCATCTGACATCATCAGCAAAAGGCTTTCCTTTGGCATGGACTTCGA 21825 Query 11403 AAATCTTCTTGCGACCTCGCACACTTGG-AAGACCCACTTGGATCTTGCGATCAAAACGA 11461 ||||| || ||| || | | | || ||| | | | |||||||||||| || Sbjct 21826 GGATCTTTTTACGATCTTCGAGAGTGGGTAAGTTGATCGTC-ACCTTGCGATCAAATCGT 21884 Query 11462 CCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAAC---C 11518 || || || || ||||| ||| |||| ||| | ||||| || || || || | | Sbjct 21885 CCTGGTCGGAGTAGGGCACTATCGAGGACATCAGCACGATTGGTCGCTGCCATGATGATC 21944 Query 11519 ACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGT 11578 ||| || |||||||||||||| ||||||||||| ||||||| ||||| | || ||| Sbjct 21945 ACATTG---GTCTCATTGTCAAATCCATCCATCTCCGTGAGTATCTGATTGAGAGTCTGT 22001 Query 11579 TCTCTCTCATCATTT---GCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCA 11635 |||| |||||||| | || |||||| || | || | || || | ||||| Sbjct 22002 TCTCGCTCATCATGTCCACCTCCGATACCA--GGCGAT-CGCTTTTTCCCTATAGCATCG 22058 Query 11636 ATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGA 11695 ||||| || || || | || |||| || ||| || || ||||||||| || Sbjct 22059 ATCTCGTCGATAAATATGATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGATCTCGG 22118 Query 11696 ACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATG 11755 || | ||||||||||| ||||||||||| ||||| | | |||| || Sbjct 22119 ACACGAGCAGCACCCACACCGACAAACATCTCGACAAACTCAGATCCAGATATAGAGAAA 22178 Query 11756 AATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 ||||| || | || || |||| |||| |||||| || ||||| || || ||||| Sbjct 22179 AATGGTACTTCACTCTCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGTTCCTGGA 22238 Query 11816 TTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGC 11850 ||| | | ||| ||||| ||||||||||| Sbjct 22239 GGTCCCACCATCAGGATACCTCGTGGGATCTTGGC 22273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984308820000