Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3112 154 2e-32 seq944 122 1e-22 >seq3112 Length=23135 Score = 154 bits (170), Expect = 2e-32 Identities = 289/421 (69%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 |||||||||||| || | ||||| |||||||| ||||| |||| ||||||||||| Sbjct 5790 ATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTCCAGTGAAATATTCTCCAT 5731 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 ||| ||||| |||||| | ||||||||| | | ||||| | | || || |||| Sbjct 5730 AAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGAC-AGCTCCACCAGCAGAC 5672 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | || | |||||||||| | ||||| || | ||||||| || || || ||| Sbjct 5671 GATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTTCATTCCAATCAGACTAC 5612 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || | ||| ||| |||||| ||||||||| ||||| | | Sbjct 5611 AAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACAGCTTCGGCAACGATTTCAT 5552 Query 129966 GAA---TGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | | ||| | | || |||| | || || || ||||| |||||| | Sbjct 5551 GCACTTTGGCCACGGT---AGGTTTGTTCTTCATGTGTTTAAAGAGGAGACAGGCAAAGT 5495 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | || || || || || || |||||||| ||||| ||| ||||| |||| || Sbjct 5494 CGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAGGTGAGACCCGGCAAGA 5435 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || || ||||||| |||||| ||||| || || ||||||||||| || ||||| | Sbjct 5434 GTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAGAAGAATATGCCCTCTA 5375 Query 130143 C 130143 | Sbjct 5374 C 5374 >seq944 Length=39427 Score = 122 bits (134), Expect = 1e-22 Identities = 383/581 (66%), Gaps = 18/581 (3%) Strand=Plus/Plus Query 13892 GCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTT 13951 ||| |||| || ||||||||||||| || | | || |||||||| || || |||| Sbjct 21702 GCGAGGATAGCCGACTCATTGAGGAGATTTCCGAGCTCAGCACCAGAAAATCCGATCGTG 21761 Query 13952 TGCTTTGCGATGGCGTGTAGCTTC--ACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGA 14009 ||||| || | | || ||||| ||||| || ||| || ||| |||| Sbjct 21762 ATACCAGCGATA-CGA-TCCCATCTGACATCATCAGCAAAAGGCTTTCCTTTGGCATGGA 21819 Query 14010 CACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAA 14069 | | | ||||| | ||| | | | |||||| | | || | ||| ||||||| Sbjct 21820 CTTCGAGGATCTTTTTACGATCTTCGAGAGTGGGTAAGTTGATCGTCACCTTGCGATCAA 21879 Query 14070 AGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC---GA 14126 | || ||||| ||||| ||||| || |||| |||| || || ||||| || || Sbjct 21880 ATCGTCCTGGTCGGAGTAGGGCACTATCGAGGACATCAGCACGATTGGTCGCTGCCATGA 21939 Query 14127 TGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGG 14186 ||| || || ||||| || ||||| ||||||||||| || | | ||||||| | Sbjct 21940 TGATCACATTG---GTCTCATTGTCAAATCCATCCATCTCCGTGAGTATCTGATTGAGAG 21996 Query 14187 TTTGTTCGCGTTCATCAT-TC--GCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 | ||||| || ||||||| || | |||||| || | || || || || | | Sbjct 21997 TCTGTTCTCGCTCATCATGTCCACCTCCGATACCAGGCG-ATCGCTTT--TTCCCTATAG 22053 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303 | || || || ||||| || | ||| |||| || |||||| || | ||||| || Sbjct 22054 CATCGATCTCGTCGATAAATATGATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGAT 22113 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 |||| || | ||||| ||||| ||||||||||| ||||| | | | | | || Sbjct 22114 CTCGGACACGAGCAGCACCCACACCGACAAACATCTCGACAAACTCAGATCCAG-ATATA 22172 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || || || || | | || || |||| |||| |||||| || ||||| || || Sbjct 22173 GAGAAAAATGGTACTTCACTCTCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGTT 22232 Query 14423 CCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGC 14463 ||||| || | | ||| ||| ||||||||| |||| Sbjct 22233 CCTGGAGGTCCCACCATCAGGATACCTCGTGGGATCTTGGC 22273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388237577000