Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq944 159 4e-34 seq3112 116 4e-21 >seq944 Length=39427 Score = 159 bits (176), Expect = 4e-34 Identities = 415/618 (67%), Gaps = 16/618 (3%) Strand=Plus/Plus Query 9366 ACTCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATAC 9425 ||||||| ||||||||| |||| ||||| ||||| || || |||| |||||||| Sbjct 21715 ACTCATTGAGGAGATTTCCGAGCTCAGCACCAGAAAATCCGATCGTGATACCAGCGATAC 21774 Query 9426 --TCCTCAACTTGACACCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTT 9483 ||| || || |||| | ||||| || ||| | || || || | | |||||| Sbjct 21775 GATCC-CATCT-GACATCATCAGCAAAAGGCTTTCCTTTGGCATGGACTTCGAGGATCTT 21832 Query 9484 CTCGCG-TCCCCGAACACTTGGGAGAGCTACTTGG-ATCTTACGATCAAAGCGACCTGGA 9541 | || || ||| |||| || | | | | ||| |||||||| || ||||| Sbjct 21833 TTTACGATCTTCGAGAG--TGGGTAAGTTGATCGTCACCTTGCGATCAAATCGTCCTGGT 21890 Query 9542 CGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCT 9601 || || || || ||| |||| |||| | ||||| ||||| || |||| | | | Sbjct 21891 CGGAGTAGGGCACTATCGAGGACATCAGCACGATTGGTCGCTGCCATGATGATCACATTG 21950 Query 9602 GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCA 9661 || ||||| ||||| ||||||||||| || | | || || | ||| ||||| || ||| Sbjct 21951 GTCTCATTGTCAAATCCATCCATCTCCGTGAGTATCTGATTGAGAGTCTGTTCTCGCTCA 22010 Query 9662 TCAT-TC--GCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9718 |||| || || |||||| || | || | || || | ||||| ||||| || Sbjct 22011 TCATGTCCACCTCCGATACCA--GGCGAT-CGCTTTTTCCCTATAGCATCGATCTCGTCG 22067 Query 9719 ATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG 9778 || || | ||| |||| || ||| ||||| | ||||||||| || ||||| Sbjct 22068 ATAAATATGATCGATGGAGCATGTTCACGAGCCTCACGAAAGAGATCTCGGACACGAGCA 22127 Query 9779 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGAC 9837 || |||||||| ||||||||||| ||||| | | | | | || | || || || || Sbjct 22128 GCACCCACACCGACAAACATCTCGACAAACTCAGATCCAG-ATATAGAGAAAAATGGTAC 22186 Query 9838 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGC 9897 | | || || || | |||| |||||| ||||||||||| || ||||| ||| | Sbjct 22187 TTCACTCTCTCCTGCGACTGCTCTGGCGAGTAGAGTCTTACCAGTTCCTGGAGGTCCCAC 22246 Query 9898 GAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAG 9957 | ||| ||||||||| |||||||| | | | |||| | ||| | ||| || Sbjct 22247 CATCAGGATACCTCGTGGGATCTTGGCTCAGAGTTCTTTGTATTTTGTAGGATTCTTGAG 22306 Query 9958 AAAATCCACAATTTCTTC 9975 ||| || |||| |||||| Sbjct 22307 AAAGTCGACAACTTCTTC 22324 >seq3112 Length=23135 Score = 116 bits (128), Expect = 4e-21 Identities = 330/501 (66%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAG 94806 |||||||| |||||||| | || ||| | |||| || || |||| | ||| Sbjct 5296 AAGAAAGCCGATTGGGCCCTCAAATGGATCTCGGATATGAACTCAAA---CTTTTCCGAG 5352 Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 || || | || ||| | || ||||| || ||||||||||| |||||| || || Sbjct 5353 CGGCTAGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAGCGATA 5412 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | ||| | ||||| || || ||| |||| |||||| ||| ||| ||||| |||||| Sbjct 5413 TTCTGGATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCATCTCT 5472 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 94986 || || || || || || || ||||| || || ||| || | ||| Sbjct 5473 CGCGATGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAACACATGAAGAACAAA 5532 Query 94987 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTC 95046 || || | | | ||| || ||| ||||| || ||||| | | |||| Sbjct 5533 CCTACCGTGGCCAAAGTGCATGAAATCGTTGCCGAAGCTGTGCTCATTGAACAGGAATTC 5592 Query 95047 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAA--ATGTCTGAAT 95104 || ||||||||||| || ||| || || ||||| ||| || |||| | | | Sbjct 5593 CTACGCGATGCCCTTCCTTGTAGTCTGATTGGAATGAA--CTGCAAGTTGATGTGTCAGT 5650 Query 95105 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAAT-TTGGAAC 95163 | ||||| | ||| | ||| | || || | || | | ||||| | | ||||||| Sbjct 5651 ACATTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCT-GTCGTGCCCAAAGTATTGGAAC 5709 Query 95164 TCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTC 95223 || | ||| || |||||||| |||||||| ||| || || ||||| |||||||| ||| Sbjct 5710 TCTACGAACCCCTTTGACTTTATGGAGAATATTTCACTGGAAGGGAAAACAAACTTTTTC 5769 Query 95224 GAAAAGAGGGTTGGGGACTAT 95244 |||| | |||||||||||| Sbjct 5770 GAAAGACGTGTTGGGGACTAT 5790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216508633000