Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq27 118 1e-21 seq5636 102 9e-17 >seq27 Length=31178 Score = 118 bits (130), Expect = 1e-21 Identities = 242/359 (67%), Gaps = 18/359 (5%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| ||||| || || || ||||| ||||| | ||| || | ||| |||| ||||||| Sbjct 5275 CCAGTCCCGATGCCTTCAGCTCCATTGATCAGGACCATGGGAATGACTGGAATGTAGAAC 5334 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | | | ||| ||| | | ||||||||| ||||| ||| ||| Sbjct 5335 TCCGGCTCGATTCTCTTATTGTCATCCTTCAAGTACTTGAGGTTCGCATCATCATCCGGG 5394 Query 117272 TCGAATATGTTCTTGG-----TCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTG 117326 | ||| || | ||| |||| | || |||||| ||||||||||| || Sbjct 5395 TGGAAGATCATTCTGGCAATCTCCATG-----AGACGAGTGTGAATGTAACGAGGAGATG 5449 Query 117327 CAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCA 117386 ||| ||||| ||||| | |||||||| || || || ||| || | |||||| | Sbjct 5450 CAGAGTCCTTACCACCGGAGAGACGCGTGCCAAACTGGCCAGAGGGAAAGAGGAGGTTGA 5509 Query 117387 GGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT----ACCTTGGAGGCTC 117442 |||||||| || ||||||||||| |||| || ||| || | | |||| || Sbjct 5510 CGTTGTTGGATCCGACAAAGTTTTGTGCCATTCCGATAATGGTGGACATCAGGGAGACT- 5568 Query 117443 GCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||| || ||||| || | | || || || |||| |||| || |||||||| Sbjct 5569 ---TCACCGTGATGATAGGCGGACATTTCAGCGACTGAGCCGGCCAATTGGGCCACCTT 5624 Score = 105 bits (116), Expect = 7e-18 Identities = 240/354 (68%), Gaps = 8/354 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || |||||||| || || || |||| ||| | ||| || | | || ||| ||| Sbjct 5275 CCAGTCCCGATGCCTTCAGCTCCATTGATCAGGACCATGGGAATGACTGGAATGTAGAAC 5334 Query 151936 TCCGGCTCCAC-CTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994 |||||||| | || || | ||||||| ||| ||| || | | || ||| |||| Sbjct 5335 TCCGGCTCGATTCTCTT-ATTGTCATCCTTCAAGTACTTGAGGTTCGCATCATCATCCGG 5393 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCG-GGAGCTGGCCG 152053 | ||| ||| || | || | | ||| ||| ||||| || |||| || | | Sbjct 5394 GTGGAAGATCATTCTGGCAATCTCCATGAGACGAGTGTGAATGTAACGAGGAGATG-CAG 5452 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||| ||||| | || ||||| |||||||| |||||||| ||||||||||| || Sbjct 5453 AGTCCTTACCACCGGAGAGACGCGTGCCAAACTGGCCAGAGGGAAAGAGGAGGTTGACGT 5512 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTC--ACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||| || || || || || ||| |||| | ||| ||| | ||| |||| Sbjct 5513 TGTTGGATCCGACAAAGTTTTGTGCC--ATTCCGATAATGGTGGACATCAGGGAGACTTC 5570 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 |||||| ||||| || | | || |||| | || ||||| || |||||||| Sbjct 5571 ACCGTGATGATAGGCGGACATTTCAGCGACTGAGCCGGCCAATTGGGCCACCTT 5624 >seq5636 Length=29557 Score = 102 bits (112), Expect = 9e-17 Identities = 279/425 (66%), Gaps = 2/425 (0%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||| || || | ||||| | || | ||||||||||| || |||| Sbjct 27155 ATCCAGTCCCGATACCTTCGGTGCCGTTTATCAACACCATCGGCACAACTGGCATATAAA 27214 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | ||| || | || |||||||| | | ||| |||| | | | ||| | | Sbjct 27215 AGAGCGGTTCAATCTTCCTCCCGTCATCTTTGAGGTAATTCATCAGAGGGTCATCATCGG 27274 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | | || || ||||| || ||| | || | ||| || || | | ||||||| Sbjct 27275 GGTGAAAGATTAAACGAGTTATCGGATTTAAGCAGGTGTGAATATACCTAGGACTGGCCG 27334 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 | || ||||| || || |||||||||||||| ||| ||| ||| ||||||| || Sbjct 27335 CGTCTTTGCCGCCATTAAGACGCGTTCCAAACTGCCCATTAGGCATGAGTAGGTTGACGT 27394 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGA-CTCGCTTCA 152172 |||||| ||| || || | || ||||| | ||| || ||| ||| | || ||| Sbjct 27395 TGTTGGAGCCGACAAAGTCTTGTGCCAACCCGATAATTGTACCCATGAGAGATTGC-TCA 27453 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 ||||||||||| | | | || |||| | || |||||||| ||||| || | ||| Sbjct 27454 CCGTGGTGATAGGAGGAGAGTTCAGCGACTGAACCTGCCAACTGGGCCACTTTGAGTTCC 27513 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 || | ||||| |||| | ||| | | | | ||||| | ||| ||| || || || Sbjct 27514 CTCATGAGGTTTCTCTTAATACAAGTGAACAAGACCTTCCTTTGGCCTGGCTTTAAGCCA 27573 Query 152293 TCCAC 152297 || || Sbjct 27574 TCAAC 27578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174445785000