Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5171 143 3e-29 seq1961 140 4e-28 seq27 132 5e-26 >seq5171 Length=25613 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || ||||| || || |||||||| || ||||||||| | | Sbjct 8245 ATGCAGATTTTTGTCAAAACTCTTACTGGTAAAACTATTACCCTCGAGGTTGAGCCCTCT 8186 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || ||||| || ||||| || ||||||||||| ||| Sbjct 8185 GACACGATCGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 8126 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| |||| || || || || ||||| || |||| | || ||| | || || ||| Sbjct 8125 CAGCGATTAATCTTCGCCGGAAAACAACTTGAAGATGGCAGAACTCTATCTGATTACAAT 8066 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || |||||||| ||| | | ||| | ||||| Sbjct 8065 ATTCAAAAGGAGTCAACCCTTCATCTCGTCCTCAGACTTAGAGGTGG 8019 >seq1961 Length=16662 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||| |||||||| || || ||||| || ||||| || || || ||||| ||| Sbjct 7937 CTATTATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCGAGC 7878 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || | || || | || | || | || ||||| ||||||||||| || || |||| Sbjct 7877 CAAGCGACTCGATCGAGAACGTCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAG 7818 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 | ||||| ||||| || ||||||||||||||| | || || | | || || | |||| Sbjct 7817 ATCAGCAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACT 7758 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | || |||||||||| |||||||||||| | ||| Sbjct 7757 ACAACATCCAAAAGGAGTCCACTCTTCATTTGGTC 7723 >seq27 Length=31178 Score = 132 bits (146), Expect = 5e-26 Identities = 244/353 (69%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 32053 AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCG 32112 |||||||| || || | |||| || || || | |||||||| ||||| || | Sbjct 5624 AAGGTGGCCCAATTGGCCGGCTCAGTCGCTGAAATGTCCGCCTATCATCACGGTGAAGTC 5565 Query 32113 TCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAAC 32172 || || | ||||||| || | || || ||||||||||| | || ||| | ||| Sbjct 5564 TCCCTGATGTCCACCATTATCGGAATGGCACAAAACTTTGTCGGATCCAACAACGTCAAC 5505 Query 32173 TTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGC 32232 | ||| || ||||| |||||||| || || ||| ||||||| ||||| |||| | | Sbjct 5504 CTCCTCTTTCCCTCTGGCCAGTTTGGCACGCGTCTCTCCGGTGGTAAGGACTCTGC-ATC 5446 Query 32233 TCC-CGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGATTTTCGACCCGTCG 32289 ||| |||||||| ||| |||||| | | || | | | ||| ||| ||||| Sbjct 5445 TCCTCGTTACATTCACACTCGTCTCATGGAGATT--GCCAGAATGATCTTCCACCCGGAT 5388 Query 32290 GACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTAC 32349 || |||||| ||||||||| |||||| | || | ||||||||| ||||||| Sbjct 5387 GATGATGCGAACCTCAAGTACTTGAAGGATGACAATAAGAGAATCGAGCCGGAGTTCTAC 5328 Query 32350 AGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | ||| || |||| ||| || || | || || || ||||||||||| || || Sbjct 5327 ATTCCAGTCATTCCCATGGTCCTGATCAATGGAGCTGAAGGCATCGGGACTGG 5275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267092054000