Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1961 120 2e-22 seq5171 113 3e-20 >seq1961 Length=16662 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||||||||| || | | |||||||| |||||| ||||||||| ||||| || || || Sbjct 7705 GCCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 7764 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| |||| ||||||| | ||| ||||| ||||| || | ||| || || || || || Sbjct 7765 AAGAGTTCTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGG 7824 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTC 34655 | |||||||||||| ||| || ||||| ||| | || | || ||| | ||| Sbjct 7825 GATACCCTCCTTGTCT-TGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGG--CTC 7881 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| || ||||| || | ||||| ||||| |||||||| Sbjct 7882 GACCTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 >seq5171 Length=25613 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || | ||| || || |||||||||||| || ||||| || Sbjct 8019 CCACCTCTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGAT 8078 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||||||||| ||||| || ||||| ||||| || || || || Sbjct 8079 AGAGTTCTGCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGA 8138 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| || | ||| || | || ||||| | ||| || Sbjct 8139 ATACCTTCCTTATCT-TGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAAC 8197 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || |||||||| || | ||||| ||||||||||||||| Sbjct 8198 CTCGAGGGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCATG 8246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314706297715475