Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5171 150 2e-31 seq1961 147 2e-30 seq5078 87.8 2e-12 >seq5171 Length=25613 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| |||||||| || || || ||||||| || || || || || | Sbjct 8247 CCATGCAGATTTTTGTCAAAACTCTTACTGGTAAAACTATTACCCTCGAGGTTGAGCCCT 8188 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| |||| |||||| || |||||||| || ||||| || || || |||| Sbjct 8187 CTGACACGATCGAGAATGTCAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCAGATC 8128 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| ||||| | |||||| |||||| | ||||| | || | || ||||||| Sbjct 8127 AGCAGCGATTAATCTTCGCCGGAAAACAACTTGAAGATGGCAGAACTCTATCTGATTACA 8068 Query 27166 ACATTCAAAAGGAGTCGACCTTACAT 27191 | |||||||||||||| ||| | ||| Sbjct 8067 ATATTCAAAAGGAGTCAACCCTTCAT 8042 >seq1961 Length=16662 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||||| || || ||| | || || || || || || || | Sbjct 7932 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCGAGCCAAGC 7873 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| |||||| || ||||||||||| || || || || || ||||| Sbjct 7872 GACTCGATCGAGAACGTCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAGATCAG 7813 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || |||||||||||| | || ||||||| |||||| Sbjct 7812 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACTACAAC 7753 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | |||||||| Sbjct 7752 ATCCAAAAGGAGTCCACTCTTCATTTGGT 7724 >seq5078 Length=41346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 135649 AGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTT 135708 |||| ||||||||| ||||| ||||| ||||||||||| |||||||| || | || Sbjct 11495 AGGTATTATGTGGTCAATTTGTGGTGTCCACGATCAAGGCTGGAAGGAACGACCGATATT 11554 Query 135709 TGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 ||| |||||||| || ||||| |||| |||||| Sbjct 11555 TGGAAAGATTCGTTACATGAATTATGCCGGTTG 11587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434885373384000