Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq1154 100 1e-16 >seq1154 Length=36805 Score = 100 bits (110), Expect = 1e-16 Identities = 351/543 (65%), Gaps = 20/543 (4%) Strand=Plus/Plus Query 66476 GGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTG 66535 || ||||||||||| || | || || || || || || | | ||| || | | Sbjct 10591 GGATCTATCGCTCTCGATGATGCTCTCGGT---GGTGGCTATGCCAAGGGTCGTATCATA 10647 Query 66536 GAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAAT 66595 || ||||| || |||||||| || || ||| | |||||| || || || | || | Sbjct 10648 GAGATCTATGGTCCAGAATCCTCTGGTAAGACGACTCTGACACTTCATGCTATTGCTGAG 10707 Query 66596 GCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAG 66655 | || ||||| | || | || || | |||| || |||||| | || || |||| Sbjct 10708 GTACAAAAGGCATGAGGAACTGCAGCATTTGTCGATGCGGAGCACGCTCTCGATCCTGCC 10767 Query 66656 TACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGC 66715 || |||||| ||||||| | |||| | ||| | | |||||| || || Sbjct 10768 TATGCCAAGAGTATCGGTGTCAATATCGATGATCTCATCATCTCTCAGCCAGACTATGGT 10827 Query 66716 GAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCG--TCG 66773 ||||| || || ||||| || || |||||| ||| || |||||| ||| ||| Sbjct 10828 GAGCAAGCTCTCGAGATAGTCGATGCACTCGTCCGGTCAGG--AGCTGTGGATCTCATCG 10885 Query 66774 TCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACA 66833 |||||||||| ||||| || || || || ||| |||| || | || || || | Sbjct 10886 TCGTTGACTCTGTGGCAGCACTCACCCCAAAGGCGGAGATCGAGGGAAATATGGGAGATA 10945 Query 66834 GTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCA 66893 || | || || || || || || ||||| ||||| | |||||| |||| || || Sbjct 10946 GTTTTATGGGACTCCATGCTCGTCTGATGTCTCAGGCTCTCCGCAAGGTCACGGGTGTCA 11005 Query 66894 TCTCCAGCACCAACAC-GCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 66952 || || ||||| | | | | | | |||||||| | || |||||||| Sbjct 11006 TCAACAAATCCAACTCAACAGTC-ATATTTATCAACCAGATCCGTATGAAGATCG----- 11059 Query 66953 GTGGGCTACGGCCCGAA----TGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGC 67008 | | || | | ||| |||||| || || || ||||| ||| ||| ||||||||| Sbjct 11060 --GAGTTATGTTCGGAAATCCTGAGACAACAACAGGAGGAAATGCTCTGAAGTTCTACGC 11117 Query 67009 CTC 67011 ||| Sbjct 11118 CTC 11120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242842818814050