Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1961 91.5 1e-13 seq5171 86.0 4e-12 >seq1961 Length=16662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||||||||| || || ||| | || ||||| | | Sbjct 7932 ATGCAGATCTTTGTAAAAACTCTTACTGGTAAGACCATAACACTAGAGGTCGAGCCAAGC 7873 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || |||||| || || ||||| || ||| | || || | Sbjct 7872 GACTCGATCGAGAAC--GTCAAAACCAAGATTCAAGACAAGGAGGGTATCCCCCCAGATC 7815 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| || || |||||||| |||| | | | | ||||| |||| Sbjct 7814 AGCAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGACGGAAGAACTCTTTCCGACTACA 7755 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| ||| |||| | |||||||| Sbjct 7754 ACATCCAAAAGGAGTCCACTCTTCATTTGGT 7724 >seq5171 Length=25613 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||||||||||| ||| |||||| | || || || | | Sbjct 8245 ATGCAGATTTTTGTCAAAACTCTTACTGGTAAAACTATTACCCTCGAGGTTGAGCCCTCT 8186 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| |||||| || || || || |||||| |||| || | Sbjct 8185 GACACGATCGAGAAT--GTCAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCAGATC 8128 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964 |||| || ||||| || |||||||||||| | || || | |||| || | || |||| Sbjct 8127 AGCAGCGATTAATCTTCGCCGGAAAACAACTTGAAGATG---GCAGAACTCTATCTGATT 8071 Query 27965 ACAACATCCAAAAAGAG 27981 |||| || ||||| ||| Sbjct 8070 ACAATATTCAAAAGGAG 8054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355836052281525