Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1961 161 2e-34 seq5171 156 1e-32 >seq1961 Length=16662 Score = 161 bits (178), Expect = 2e-34 Identities = 169/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | |||||||||||||| ||||||||||| || || | ||| || ||| Sbjct 7715 AGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTT 7774 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||| ||||| || || |||||||| ||||| || || || || | || ||| Sbjct 7775 CCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCC 7834 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGA 211073 ||||| || ||||| ||| ||||| ||||| | ||| |||| || ||||| || Sbjct 7835 TTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTC---GCTTGGCTCGACCTCTAGT 7891 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| |||||||| | |||||| Sbjct 7892 GTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 >seq5171 Length=25613 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| || ||||| || ||||| ||||| || || ||||| | || || || Sbjct 8027 AAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCT 8086 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| || || || || |||||||| | || || || || ||||||| ||||| Sbjct 8087 GCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTC 8146 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || ||||| ||| || || ||||| ||||||||| ||||||||||| || Sbjct 8147 CTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGT 8206 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| || ||||| | |||||| Sbjct 8207 AATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCAT 8245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159061776317375