Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5171 129 1e-24 seq1961 123 6e-23 seq764 100 7e-16 >seq5171 Length=25613 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| ||||| || || || || || || ||||| | ||||||||| | | |||||| Sbjct 8027 AAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGATAGAGTTCT 8086 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| || || || || |||||||| | ||| || || || || ||||||||||| Sbjct 8087 GCCATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAGGAATACCTTC 8146 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||| ||||| ||||| || ||| ||||| ||||| |||| || || || | || Sbjct 8147 CTTATCTTGAATCTTGGCTTTGACATTCTCGATCGTGTCAGAGGGCTCAACCTCGAGGGT 8206 Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || | |||||| Sbjct 8207 AATAGTTTTACCAGTAAGAGTTTT 8230 >seq1961 Length=16662 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | || |||||||| || ||||||| ||||| |||| | |||||| Sbjct 7715 AGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTT 7774 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| | ||||| ||||| |||||||| ||||| || || || || ||||| ||| Sbjct 7775 CCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATACCCTCC 7834 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| || || ||||| | ||| | || || |||| || Sbjct 7835 TTGTCTTGAATCTTGGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCGACCTCTAGTGTT 7894 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || | |||||||| || | ||||| Sbjct 7895 ATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCAT 7932 >seq764 Length=12523 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| |||||||||||||| || || || || |||||||| ||||| ||||| || Sbjct 5219 AAGATTTGTCCATCAGTAATAGAAATGACGTTGGTTGGGATATAGGCAGAGACATCGCCA 5278 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||||| ||||| | ||||| || || ||||| ||| || Sbjct 5279 GCTTGTGTTTCGATTACAGGCAGAGCTGTGAGGGAGCCACCGCCATAA 5326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192438378216050