Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq976 264 2e-65 seq3112 122 1e-22 >seq976 Length=29826 Score = 264 bits (292), Expect = 2e-65 Identities = 755/1143 (66%), Gaps = 36/1143 (3%) Strand=Plus/Minus Query 77493 ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 77552 ||||||| |||||||| || || | || || ||||| |||||||| | | ||||||| Sbjct 23353 ATAAAGGTATCTGCTAGACCTTGTATGCCGATTCCAATTGGTCTATGGCGCATATTGGAG 23294 Query 77553 ATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACA 77612 | |||||||| || | |||||| | || || || |||| || || ||||| | Sbjct 23293 AGTTTAGCTTGAGGCAGTGGATAAAAGTTGATATCAATAACCTTGTTTAGATTCTTGGTG 23234 Query 77613 ACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTT-CCATCTATA---ACA 77666 | ||||| | | | |||| || ||| || || |||| |||||| | ||| Sbjct 23233 ATGACTTTGGCAATCAACCTTAGCTTTTCAAAGTCGAAACTCTTGCCATCTGCACTGACA 23174 Query 77667 AACATGTTCAAAGCTATA--GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA- 77723 || | | ||| | | || || || || || ||||| | ||||| || || | Sbjct 23173 AAG--GCTGGAAGGGAGATTGAGGCCAGGTTGCAGACTGCAATCTCATCAG-GTGAACTG 23117 Query 77724 TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTG 77783 |||| || || || || || |||||| || || || |||| || ||| || || Sbjct 23116 TATTCTACAATTTCTGTGCACAGATTAGAACTACGAATGGTCCCCAAATGTTGCTGATTC 23057 Query 77784 CTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGAT 77843 |||| ||| || | || || || |||| | ||| | || ||||| || |||| Sbjct 23056 GACTTTGAATTACAGGCATCTTTGTAGAGAACGTATGGATTACCAGTTTCGATTTGTGCA 22997 Query 77844 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTT 77903 || | ||| | | ||| | | | ||| || | | ||| | | | | | Sbjct 22996 TCAACAATTGCGTACCACAACTCCCGAGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCT 22937 Query 77904 TCATATTGAGTATATAGC-CGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 ||||||||| ||| || | || || || |||||| ||| ||| ||| ||||| Sbjct 22936 TCATATTGAAGATAGAGTTCATTGAACTTTGG-TCCCCAGCAATCTGCCAGTCCCGGGCA 22878 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 |||||||||| |||||||| ||| || |||| | || || || | ||| || | ||| Sbjct 22877 TTCATTTGGGTCCATCAATGTCCATTCCTCATCCTTCTCGACACGCTCCATGAATAAATC 22818 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 |||||||| || ||| || || || || | ||| |||||| || ||||| || Sbjct 22817 TGGTATCCAAAGGGCATAGAAGAGGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTT 22758 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | | | |||| ||| | ||| || | |||||||||||| ||||| || || | | | Sbjct 22757 TCTCATCTCGACAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGC 22698 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 |||||||| ||||||||||| || || | ||| | |||||||||||| | ||||| | Sbjct 22697 TCCAGGTCTCTTATTACCTCCTTGGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAG 22638 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCG 78262 ||| ||||| || || || ||| ||||| ||||| ||||| || ||| |||| Sbjct 22637 CATGGGAATGATGCCATTCGATTCACCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCG 22578 Query 78263 AATATT----ACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAAC 78318 |||| | || | || | || || || || || | ||||| || || || || Sbjct 22577 AATAGTGTGCAC-ACTG---AGGCCAATACCACCAGCATTTTTAGAGATAAGGGCACATT 22522 Query 78319 GTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGC 78378 |||| | || ||||| || || || ||||| ||||| |||| |||| || || || | Sbjct 22521 GTTTGAGAGTCTCGTATATGCCTTCAATACTATCATCATTCATTGTAAGGAGGAAGCAAC 22462 Query 78379 TAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACC 78438 | |||||||| | || ||| || | ||||| | || ||||| || || || ||| Sbjct 22461 TGGACATTTGTGGCTGCGGAGTGCCCGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACA 22402 Query 78439 ATTTTTCAGAAAGTAGA-TTGTATGTTTCAATAGCTGATTCTA---TGTCCCATTGATGA 78494 | |||||||| | || | ||||| || | |||| || | | ||| | ||| Sbjct 22401 ACTTTTCAGACA-TATACTTGTAGGTCATTAAAGCTTCCTCAACATTATCCAA---ATGG 22346 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTT---ATTATTT 78551 || || | | || | ||| || | |||||||| || ||| |||||| |||| | Sbjct 22345 ATGCCAAGAGAAACTCTCATTAATAGGTGCTGAGGCCTCTCATACGTCTTGCCGTTATAT 22286 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 78611 | || | |||||| ||||| | || || || || |||||||||||| ||||||| Sbjct 22285 CTCTT---GAGGTATGACTTTTCTAGGGTCTTGAATCCGAAATAGTTGTATTCAAAGTCT 22229 Query 78612 CTC 78614 ||| Sbjct 22228 CTC 22226 >seq3112 Length=23135 Score = 122 bits (134), Expect = 1e-22 Identities = 302/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 |||||| || |||||||| || || |||||| | |||||||| || ||||| ||||| Sbjct 5808 CATAACGCCAGCCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTC 5749 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC 47956 || ||| ||||| |||||||| ||||| || || | || || ||| | Sbjct 5748 CAGTGAAATATTCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGA 5689 Query 47957 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATT 48016 | || | ||| | ||| || || ||||| || || ||||| | || || Sbjct 5688 CAGCTCCACCAGCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTT 5629 Query 48017 CATTCCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAG 48075 |||||| || || || || || || || |||| ||| || ||||| || |||| Sbjct 5628 CATTCCAATCAGACTACAAGGAAGGGCATCGCGTAGGAAT-TCCTGTTCAATGAGCACAG 5570 Query 48076 CATCC---ACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAA 48132 | || || ||| || ||| || | || | | ||| | | || ||||||| Sbjct 5569 CTTCGGCAACGATT-TC-ATGC-ACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAA 5513 Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 | | | ||| ||||| || ||| || |||||||| | | || | || || || Sbjct 5512 AGAGGAGACAGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAA 5453 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | |||||||| |||| ||||||||||| || | ||| ||||| || ||||| || |||| Sbjct 5452 AGGTGAGACCCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAG 5393 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | ||||||||||| |||||||| | ||| || Sbjct 5392 AGAAGAATATGCCCTCTACGGCGGAAAAGGC 5362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694616048588000