Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq976 286 5e-72 seq3112 127 3e-24 >seq976 Length=29826 Score = 286 bits (316), Expect = 5e-72 Identities = 860/1310 (66%), Gaps = 46/1310 (4%) Strand=Plus/Minus Query 75925 TTGTAGAATTCCGTTGCTAGCATATGA--TCCATTATATGTTTCGTAAGTCCCGTCCTTT 75982 |||||| ||||| |||||| ||| || |||| ||| || |||||||| |||| ||| Sbjct 23516 TTGTAGGATTCCCTTGCTA--ATAGGACATCCAGGATAGGTCTCGTAAGTGCCGTTCTTC 23459 Query 75983 TCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 76042 | ||| | || || | ||| | || | || || | || || || |||| Sbjct 23458 TGAGCCAACTCACACGATGTCTCCAGAGCGGAAAAGTAGATATTCTCAAAGATGAGCTTA 23399 Query 76043 TTAAGATCTTGC--GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTG 76100 || | | ||| ||||| | || ||| ||||||| | ||||| | ||||| Sbjct 23398 TTCAA--CCTGCTAGCTTCGGGGCTGTCATAAGGATACCTCATTTTCATAAAGGTATCTG 23341 Query 76101 CTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTG 76160 |||| || || | || || ||||| |||||||| | | ||||||| | || ||||| | Sbjct 23340 CTAGACCTTGTATGCCGATTCCAATTGGTCTATGGCGCATATTGGAGAGTTTAGCTTGAG 23281 Query 76161 GAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCA 76220 | | || ||| | || ||||| |||| || || ||||| || | ||||| | | Sbjct 23280 GCAGTGGATAAAAGTTGATATCAATAACCTTGTTTAGATTCTTGGTGATGACTTTGGCAA 23221 Query 76221 CGTCCTTTAGTTTGAGAAAATCAAAT---TTTCCATCTA---TCACAAACATATTAAGAG 76274 | |||| || ||| || || || |||||| | ||||| ||| | Sbjct 23220 TCAACCTTAGCTTTTCAAAGTCGAAACTCTTGCCATCTGCACTGACAAAGGCTGGAAGGG 23161 Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCATTAGC---ATTGGCATATTGTATTATCT 76331 || || || || || || || || | ||||| || | || |||| || || | Sbjct 23160 AGATTGAGGCCAGGTTGCAGACTGCAATCTCATCAGGTGAACTG---TATTCTACAATTT 23104 Query 76332 CCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC 76391 | ||||| |||||| || || || || | || ||| || || |||| |||| Sbjct 23103 CTGTGCACAGATTAGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAATTAC 23044 Query 76392 ATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATT 76451 | | || || || ||||| | ||| | |||||||| || |||| || | ||| | | Sbjct 23043 AGGCATCTTTGTAGAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATTGCGT 22984 Query 76452 TCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTAT 76511 ||| | | | ||| || | | | ||| ||| | | ||||||||| || Sbjct 22983 ACCACAACTCCCGAGCCTTGAGTGTCCTCTTGCCCTTCTTTTGTTCTTCATATTGAAGAT 22924 Query 76512 ATAACCGTTCA---AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGAC 76568 | | ||||| || | |||||| ||| ||| || || |||||||| || Sbjct 22923 AGA---GTTCATTGAACTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATTCATTTGGGT 22867 Query 76569 ACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATA 76628 |||||||| ||| || |||| | || || || | ||| || | ||| |||||||| | Sbjct 22866 CCATCAATGTCCATTCCTCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCAAA 22807 Query 76629 GAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTA 76688 | ||| || || || || | ||| |||||| || ||||| ||| | | || | Sbjct 22806 GGGCATAGAAGAGGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTCGA 22747 Query 76689 GGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTT 76748 || | ||| || | |||||||||||| ||||| || || | | | || |||| | Sbjct 22746 CAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCTCT 22687 Query 76749 TATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAA 76808 |||||||||| || || | ||| | || ||||||||| | ||||| | ||| ||||| | Sbjct 22686 TATTACCTCCTTGGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAATGA 22627 Query 76809 TGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAA 76868 |||| || ||| |||||| ||||| ||||| || ||| | | |||||| | | Sbjct 22626 TGCCATTCGATTCACCATTCGTTCCTGAAATGTATGCGCCAGAGCCGCGAATAGTGTGCA 22567 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 | ||||| || || || || |||||||||| || ||||| |||| | || || | Sbjct 22566 CACTGAGGCCAATACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCTCGT 22507 Query 76929 AGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGAT 76988 | ||||| || ||||||||||| |||| |||| || || || || |||||||| | | Sbjct 22506 ATATGCCTTCAATACTATCATCATTCATTGTAAGGAGGAAGCAACTGGACATTTGTGGCT 22447 Query 76989 GAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTA 77048 | ||| || | ||||| | || ||||| || ||||||||| | |||||||| | || Sbjct 22446 GCGGAGTGCCCGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTCAGACA-TA 22388 Query 77049 GA-TTGTATGTTTCAATAA--CTGCTTCTA---TATCCCATTGATGAATTCCTACAGCGA 77102 | ||||| | ||| ||| || | || | ||||| | ||| || || | || | Sbjct 22387 TACTTGTAGG--TCATTAAAGCTTCCTCAACATTATCCAA---ATGGATGCCAAGAGAAA 22333 Query 77103 CACGCATCAACATATGCTGAGGTCGTTC-TACAGTCTT---ATTATTTATTTTCAACAAG 77158 | | ||| || | |||||||| | || ||| ||||| |||| | | || | | Sbjct 22332 CTCTCATTAATAGGTGCTGAGGCCTCTCATAC-GTCTTGCCGTTATATCTCTT---GAGG 22277 Query 77159 TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 77208 ||||| ||||| | || || || || |||||||||||| ||||||||| Sbjct 22276 TATGACTTTTCTAGGGTCTTGAATCCGAAATAGTTGTATTCAAAGTCTCT 22227 >seq3112 Length=23135 Score = 127 bits (140), Expect = 3e-24 Identities = 308/461 (67%), Gaps = 4/461 (1%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||||| || || || |||||| | |||||||| || ||||| ||||| Sbjct 5808 CATAACGCCAGCCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTC 5749 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 || ||| ||||| |||||||| ||||| || || ||| || || ||| | Sbjct 5748 CAGTGAAATATTCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCAATACTTTGGGCACGA 5689 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | || | ||| | ||| || || ||||| || ||| ||||| | || || Sbjct 5688 CAGCTCCACCAGCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAGTT 5629 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGACAG 46564 |||||| || || | || || || || |||| ||| || |||||||| |||| Sbjct 5628 CATTCCAATCAGACTACAAGGAAGGGCATCGCGTAGGAAT-TCCTGTTCAATGAGCACAG 5570 Query 46565 CATCCGATATTATCG-ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAAC 46623 | || | | || ||| ||| | || | | ||| | | ||| |||||||| Sbjct 5569 CTTCGGCAACGATTTCATGC-ACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTAAAG 5511 Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 | | ||| ||||| || ||| ||||||||||| | | || | || || ||| Sbjct 5510 AGGAGACAGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTAAAG 5451 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 ||||| || |||| |||||||| || || | ||| ||||| || ||||| || ||||| Sbjct 5450 GTGAGACCCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCAGAG 5391 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 ||||||||||| ||||| || | || || || || | ||| Sbjct 5390 AAGAATATGCCCTCTACGGCGGAAAAGGCCACTAGCCGCTC 5350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712880261544000