Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3112 158 1e-33 >seq3112 Length=23135 Score = 158 bits (174), Expect = 1e-33 Identities = 357/532 (67%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 |||||| || |||||||| ||||||||||||||||||||||| ||||| || || || Sbjct 5808 CATAACGCCAGCCTTTTGATAGTCCCCAACACGTCTTTCGAAAAAGTTTGTTTTCCCTTC 5749 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT--ACAT 23322 | ||| ||||| |||||||| ||||| || || | || || | | | |||| || Sbjct 5748 CAGTGAAATATTCTCCATAAAGTCAAAGGGGTTCGTAGAGTTCCA-ATA-CTTTGGGCAC 5691 Query 23323 GATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 || | ||| | || | ||| || ||||||||||| || ||||||||||| | || Sbjct 5690 GACAGCTCCACCAGCAGACGATCGGCCACAAATTCAATGTACTGACACATCAACTTGCAG 5631 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACA 23442 || || || || || | |||| ||||| || |||| | ||||||| ||| Sbjct 5630 TTCATTCCAATCAGACTACAAGGAAGGGCATCGCGTAGGAATTCCTGTTCAATGAGCACA 5571 Query 23443 GCATCTTTAATTATTTGAACAATAACTT---CTTCACTAGGTGGATATTTTAAATACTTA 23499 || || || |||| || |||| | | ||||| | || | | ||| Sbjct 5570 GCTTCGGCAACGATTT---CATGCACTTTGGCCACGGTAGGTTTGTTCTTCATGTGTTTA 5514 Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 || | | ||| ||||| || ||||||||||||||| | | || | ||||| | Sbjct 5513 AAGAGGAGACAGGCAAAGTCGGTATGTAGGCCTTCATCGCGAGAGATGAGCTCATTGCTA 5454 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || || | || |||| | ||| ||||| || ||||| ||||| || || || || || Sbjct 5453 AAGGTGAGACCCGGCAAGAGTCCACGTTTCTTCATCCAGAATATCGCTGCGAAGGACCCA 5394 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 || ||||| || ||||| || || | ||||||||| || || ||| ||| || Sbjct 5393 GAGAAGAATATGCCCTCTACGGCGGAAAAGGCCACTAGCCGCTCGGAAAAGTTTGAGTTC 5334 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAA 23731 ||| || |||||||| | ||||| || ||| || || ||||||| Sbjct 5333 ATATCCGAGATCCATTTGAGGGCCCAATCGGCTTTCTTCTTCACGCACTCAA 5282 Score = 82.4 bits (90), Expect = 8e-11 Identities = 180/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 23761 TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATA 23820 ||||||| ||| | || || || ||||| |||| | |||||||| ||||||||| Sbjct 5184 TTTTCTTTTGCATCGCTAATGTAGGTGTCAATCAGTAGAGAGTACATTTCCGAATGAATA 5125 Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 || || || |||||||| || || || ||| ||||| | | | || || | Sbjct 5124 TTCTCTATTGCAATCTGGAAGGAGTAGAAGGCTCTGGCTTCGGGAATCTTGACCTCTTGG 5065 Query 23881 AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGA 23940 | || |||| | | ||||||| || || || || |||||||| ||||| || || Sbjct 5064 CAGAACCTTTCCACGAGATTTTCGAGGACGATTCCGTCGCTAGCAGCGAAGAAGGCCAGC 5005 Query 23941 ACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTT 24000 |||| | ||| || | ||| ||| | | | | ||||| || | ||||| Sbjct 5004 ACATGCGAGAGAAAGTGGCGTTCTTCATCTTTGAGGTCCTGCCAATGCTTGAGGTCTTTC 4945 Query 24001 GATAAATCAACTTCATCAACTGTCCAAAAA 24030 |||| ||||| || ||||| ||||||||| Sbjct 4944 GATATGTCAACCTCTTCAACAGTCCAAAAA 4915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521448399505000