Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1961 113 3e-20 seq5171 109 4e-19 >seq1961 Length=16662 Score = 113 bits (124), Expect = 3e-20 Identities = 180/251 (72%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168 || ||||| ||||| | |||| ||||| ||| |||||||||||||||||| |||| Sbjct 7706 CCGCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 7765 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | |||| |||| ||||| || |||||||| | ||| |||||||||| | Sbjct 7766 AGAGTT--CTTCCGTCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGG 7823 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | ||| ||||| || ||||| | || | |||| | || | |||| | || Sbjct 7824 GGATACCCTCCTTGTCTTGAATCTT-GGTTTTGACGTTCTCGATCGAGTCGCTTGGCTCG 7882 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATG 44347 ||||| | || || ||||| || || || || || || ||||| ||||| || ||||| Sbjct 7883 ACCTCTAGTGTTATGGTCTTACCAGTAAGAGTTTTTACAAAGATCTGCATAAT-AGAATG 7941 Query 44348 -AAAATAGCGG 44357 ||||| |||| Sbjct 7942 TAAAATGGCGG 7952 >seq5171 Length=25613 Score = 109 bits (120), Expect = 4e-19 Identities = 176/246 (72%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || ||||| ||||| | || || ||||| || ||||||||| || |||||||| | Sbjct 8019 CCACCTCTAAGTCTGAGGACGAGATGAAGGGTTGACTCCTTTTGAATATTGTAATCAGAT 8078 Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| || | || || || || || ||||| ||||| || ||||||||||||| || Sbjct 8079 AGAGTTCT-GC-CATCTTCAAGTTGTTTTCCGGCGAAGATTAATCGCTGCTGATCTGGAG 8136 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | ||||||||| || ||||| |||| | ||| | || ||||| | || || Sbjct 8137 GAATACCTTCCTTATCTTGAATCTT-GGCTTTGACATTCTCGATCGTGTCAGAGGGCTCA 8195 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATG 44347 ||||| | ||||| || || || || || || || || || || |||||| || |||| Sbjct 8196 ACCTCGAGGGTAATAGTTTTACCAGTAAGAGTTTTGACAAAAATCTGCATG--GTTAATG 8253 Query 44348 AAAATA 44353 ||||| Sbjct 8254 GAAATA 8259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359963746648275