Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4589 217 2e-51 seq4951 116 4e-21 >seq4589 Length=3505 Score = 217 bits (240), Expect = 2e-51 Identities = 486/723 (67%), Gaps = 15/723 (2%) Strand=Plus/Plus Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064 ||||||||| || ||||| | || || | || | || || ||||| ||| || Sbjct 2252 ACAATTCATGCCGATAAGATCGACAGGTAAGGCATCTGTGAGGAATTCACATTCTATGCT 2311 Query 24065 GACCGCGTCTGTTATAATAGATCTTAC--TGTTTCTTCACTCGGTGGAT--ACAATAAAT 24120 ||| || || || ||||| || ||| | ||||| | | ||| || ||||| | Sbjct 2312 GACGGCCTCCGTCATAATG--TCATACACTCTTTCTGCTGTAGGTTTATTGACAATG--T 2367 Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 | || || || | ||| || || ||| ||| || || || || | ||| || | |||| Sbjct 2368 GCTTGAAAATTAGACACGCAAAGTCGGTGTGAAGGCCTTCATCGCGACTGATCAGCTCGT 2427 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 | || || || || ||||| || |||||||| || |||||||| || || ||||| | Sbjct 2428 TACTGAAGGTAAGACCAGGCATGAGACCACGCTTCTTGAGCCAAAAAATAGAAGCAAACG 2487 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300 | || || ||||||| || || | || || || || | | | || | || | Sbjct 2488 AACCGGAGAAGAAAACACCCTCAATAGCAGCGAAAGCCACCACACGCTCAGCGTACGATG 2547 Query 24301 CGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 | || | || |||||||| | |||||||| |||||||| || || |||| | Sbjct 2548 CCCTCTTATTCGCGATCCACTTAAGTGCCCAATCCGCCTTCTTAGCGACGCATGGCAGCG 2607 Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 | | || || ||||| | | | | || || || ||||||||||| |||| Sbjct 2608 TTTGAATGGCGTTAAATAAAAAATCACGCTCTGCCGGGTCCTTGACATATGTATCGATCA 2667 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 |||| ||||||||| ||||||||||| |||| ||||| ||| | ||| || ||||| | Sbjct 2668 GAAGAGAATACATTTCAGAATGAATGTTCTCAACGGCCACTTGCATTCCATAAAAACAAC 2727 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTAT 24535 |||||| | || || ||||| ||||||| ||| | ||||||||| || || || Sbjct 2728 GAGCCTCAGGAACTTGAACTTCGTTACAAAA--ATTCAAGGTTAAATTTTCGTTAACGAT 2785 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 24595 || ||||| |||||||| || |||| |||| ||||| | | ||| | | Sbjct 2786 GCCATCACTCGCTGCAAAGAAGGCCAGAACATACGAAATAAAGTGTCGTTCACCATCATT 2845 Query 24596 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 || || | |||||| | | ||| || | || ||| || || || || |||||||| || Sbjct 2846 GAGATTTTCCCAATCGGTAAGATCCTTCGCTAAATCAACCTCCTCAACCGTCCAAAAAGA 2905 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || | || || ||||| | | ||| |||||||||||||| ||||| | | ||||| Sbjct 2906 AGCGACAGCTTTCTTATAGAACTCCCAAATGTCATGATATTGTATTGGCATCACGACAAA 2965 Query 24716 TCT 24718 ||| Sbjct 2966 TCT 2968 >seq4951 Length=3275 Score = 116 bits (128), Expect = 4e-21 Identities = 256/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 54035 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 ||||| || ||||| || |||||||| || | || |||||||| | | | ||||| Sbjct 1779 TTCATGAACAGATCGGGGATCCAAAGCGCGAGGAAAAGATCTCTTGCACGAATCTCCTCA 1838 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || || ||||| | || | || || | ||| | |||||| || || | | Sbjct 1839 GCGCCAGTGTTCTTCCGCAATTCCACAAATTGCAGTACATCTGGATGCCATGGCTCAAGG 1898 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || | | | | ||||| |||||||| || || || |||| || | ||| ||| | Sbjct 1899 TAGACAGCGAAGGCGCCAGGTCGTTTGTTCCCACCTTGGTCTACATAACGAGCAGTGCTG 1958 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || | |||| || ||| || | || |||||| || | |||||||| |||| ||| | Sbjct 1959 TTGAAGACTCGCAGCATCGGTACAAGACCATTCGACTCCCCATTGGTGCCGGCGATGAAC 2018 Query 54275 CTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 | || | |||||| | || |||| |||| ||||| || || |||| |||| Sbjct 2019 GTGCCCTTACTCCGAATACAATGAACATTGA--GACCGATCCCACCCGCACTTTTGGAGA 2076 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 | | || || |||| | ||| || || |||||||| ||||| |||||| |||| | | Sbjct 2077 TAAGGGCACACTGTTTGAGCGTGTCGTATATGCCCTCAATACTGTCATCCTTCATCGTGA 2136 Query 54393 GTAGAAAACAGCTAGACATTTG 54414 | ||| ||||||||||| || Sbjct 2137 CCAAAAAGCAGCTAGACATCTG 2158 Score = 116 bits (128), Expect = 4e-21 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || ||||| || || |||| ||||| | || || |||| | ||| || || |||||| Sbjct 2188 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2247 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 || ||||| |||||| |||| | | | ||| ||||||||||| || | | || Sbjct 2248 TCGATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTGTGCATTAGGCGTC 2307 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || || ||||| | || || || || || | ||||| ||| |||| | |||||||||| Sbjct 2308 CCAGCGTTAAAGAGCGTTGGTGAGGCATGAATCAACCACTTTCCAGACATTAGATTGTAC 2367 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 ||||| || || | || | || ||||| |||| | ||| ||||| |||||| Sbjct 2368 GTCTCAATGGCAGCATCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACATG 2427 Query 54548 TGCTGAGGTCTTTC 54561 | ||||||||| || Sbjct 2428 TACTGAGGTCTCTC 2441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593498279041680