Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4589 260 1e-64 seq4951 138 1e-27 seq2251 111 1e-19 seq210 111 1e-19 seq30086 100 3e-16 seq10174 100 3e-16 >seq4589 Length=3505 Score = 260 bits (288), Expect = 1e-64 Identities = 525/770 (68%), Gaps = 18/770 (2%) Strand=Plus/Minus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 ||||| || ||||||||| || | || || |||||| ||||||||| | | || || Sbjct 2977 AATCCTCGAAGATTTGTCGTGATGCCAATACAATATCATGACATTTGGGAGTTCTATAAG 2918 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 || || | || || |||||||| || || || || || | | |||||||| | |||| Sbjct 2917 AAAGCTGTCGCTTCTTTTTGGACGGTTGAGGAGGTTGATTTAGCGAAGGATCTTACCGAT 2858 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 ||||| ||||| || ||| || | |||||| | || |||| || || || Sbjct 2857 TGGGAAAATCTCAATGATGGTGAACGACACTTTATTTCGTATGTTCTGGCCTTCTTTGCA 2798 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || ||||| || |||||||| ||||| | | |||| | ||||| ||||| Sbjct 2797 GCGAGTGATGGCATCGTTAACGAAAATTTAACCTTGAATTTTTGTAACGAAGTTCAAGTT 2738 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | ||||| | || ||||| ||| | ||||||||| |||| ||| | ||||| |||||| Sbjct 2737 CCTGAGGCTCGTTGTTTTTATGGAATGCAAGTGGCCGTTGAGAACATTCATTCTGAAATG 2678 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA----CTGTT 57883 ||||| || || |||||||| || || |||||| || | || | ||| || | || Sbjct 2677 TATTCTCTTCTGATCGATACATATGTCAAGGAC-CCGGC-AG-AGCGT-GATTTTTTATT 2622 Query 57884 CAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 ||||| || |||| |||| ||| |||| |||||||| || ||| || | || |||| Sbjct 2621 TAACGCCATTCAAACGCTGCCATGCG-TCGCTAAGAAGGCGGATTGGGCACTTAAGTGGA 2563 Query 57943 T----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 | || ||| | ||| ||| ||| ||| | | | || ||||| || | || Sbjct 2562 TCGCGAATAAG----AGGGCATCGTACGCTGAGCGTGTGGTGGCTTTCGCTGCTATTGAG 2507 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 ||| | ||||| || || ||||| | || |||||| | ||||| || || || ||| Sbjct 2506 GGTGTTTTCTTCTCCGGTTCGTTTGCTTCTATTTTTTGGCTCAAGAAGCGTGGTCTCATG 2447 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118 || || || || || || |||||| |||| ||||| || || || || || || ||| Sbjct 2446 CCTGGTCTTACCTTCAGTAACGAGCTGATCAGTCGCGATGAAGGCCTTCACACCGACTTT 2387 Query 58119 GCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATT 58178 ||||| ||||| | | ||||||||||||||||| || || | | | |||||| Sbjct 2386 GCGTGTCTAATTTTCAAGCACATTGTCAATAAACCTACAGCAGAAAGAGTGTATGACATT 2327 Query 58179 ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATG 58238 || || ||||| ||| || ||| ||| || |||| || ||| |||| || | | Sbjct 2326 ATGACGGAGGCCGTCAGCATAGAATGTGAATTCCTCACAGATGCCTTACCTGTCGATCTT 2267 Query 58239 CTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 |||| ||||| | | |||| ||||||| ||||||||| || Sbjct 2266 ATCGGCATGAATTGTCGCCTAATGTGTCAGTACATAAGGTTTGTTGCTGA 2217 >seq4951 Length=3275 Score = 138 bits (152), Expect = 1e-27 Identities = 175/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||| || || | || || ||||| || |||||||| ||||||||||| ||||| || || Sbjct 2205 TTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCCTCGATACTGTCATCCTT 2264 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 ||| |||||| || || |||||| || || || ||||| | || || || || Sbjct 2265 CATCGTGACCAAAAAGCAGCTAGACATCTGTGCATTAGGCGTCCCAGCGTTAAAGAGCGT 2324 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC--GACATTAGATTGTACGTGTCGATGGCGGCA 23818 || ||| || | || | | ||| ||||||||||||||||| || ||||| ||| Sbjct 2325 TGGTGAGGCATGAATCAACCA--CTTTCCAGACATTAGATTGTACGTCTCAATGGCAGCA 2382 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 || | ||| || ||||| ||||| || | ||| ||||| | |||||| ||||||||||| Sbjct 2383 TCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACATGTACTGAGGTCTCTC 2441 >seq2251 Length=6394 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || || || || || ||||| ||||| | || ||||| || Sbjct 1001 AAAATGCAAATTTTTGTTAAAACCCTTACTGGGAAAACCATCACTCTTGAGGTTGAGCCT 1060 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | | || | |||||| || ||| |||||||| ||| | || || ||| Sbjct 1061 AGCGACTCTATTGAGAACGTCAAAGCGAAAATTCAAGACAAGGAGGGCATACCACCAGAC 1120 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| || || || || || ||||| |||||||| || ||| | ||| || Sbjct 1121 CAGCAACGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGGCGAACTCTCTCCGACTAC 1180 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| |||||||| || ||||| || | ||||| Sbjct 1181 AACATTCAAAAGGAATCGACGCTCCATCTTGTTTTGAGACT 1221 >seq210 Length=64943 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| ||||| ||||| ||||| ||| | || || || || Sbjct 39481 CATGCAAATATTTGTGAAGACGCTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAG 39540 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || || ||| |||||||| ||| | || || ||||| Sbjct 39541 TGACTCGATAGAGAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATTCCACCGGACCA 39600 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | ||||| || || || ||||||||||| | ||| || ||| || || Sbjct 39601 GCAGCGTTTGATATTTGCGGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 39660 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || |||||||||||| |||| || |||| Sbjct 39661 TATACAAAAGGAGTCGACTCTTCATTTGGTGCTCCGACT 39699 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || ||||| ||||| ||| | || || || ||| Sbjct 42172 ATGCAAATCTTCGTCAAAACTCTTACTGGCAAGACGATTACCCTGGAGGTGGAGCCGAGT 42231 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | || | || || || || ||||||||| ||| | || || ||||| Sbjct 42232 GATTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAA 42291 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||||||||| ||| | ||| || || || ||| Sbjct 42292 CAACGTCTCATCTTTGCTGGTAAACAGTTGGAGGACGGTCGCACTCTGTCGGACTACAAC 42351 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || || |||||| |||| || Sbjct 42352 ATTCAAAAGGAGTCAACCCTTCATTTGGTGCT 42383 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 |||||||| ||| | ||||| || ||||||||| |||| ||||| || || ||||||||| Sbjct 30961 GACAAGGAGGGCATCCCGCCGGATCAGCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAA 30902 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | ||| || ||| || || || ||||| |||||||| |||||| |||| ||| Sbjct 30901 GATGGTCGCACTCTGTCCGACTACAATATACAAAAGGAATCGACCCTTCATTTGGTGCTT 30842 Query 31406 AGACT 31410 |||| Sbjct 30841 CGACT 30837 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 |||||||| ||| | ||||| || ||||||||| |||| ||||| || || ||||||||| Sbjct 39803 GACAAGGAGGGCATCCCGCCGGATCAGCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAA 39862 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | ||| || ||| || || || ||||| |||||||| |||||| |||| ||| Sbjct 39863 GATGGTCGCACTCTGTCCGACTACAATATACAAAAGGAATCGACCCTTCATTTGGTGCTT 39922 Query 31406 AGACT 31410 |||| Sbjct 39923 CGACT 39927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || || || || || ||| | || || || ||| Sbjct 30599 CATGCAAATATTTGTGAAGACGCTTACGGGGAAGACTATTACCTTGGAGGTGGAGCCGAG 30540 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || || || |||||||| ||| | || || ||||| Sbjct 30539 TGACTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCA 30480 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | ||||| || || || ||| ||||||| | ||| || || || || Sbjct 30479 GCAGCGTTTGATATTTGCGGGTAAGCAGCTGGAAGATGGTCGCACTCTGTCTGACTACAA 30420 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 ||||||||| || || ||||| ||||| || ||| | || | |||||| || Sbjct 30419 CATTCAAAAGGAGTCAACTCTGCATCTTGTGCTTCGTCTTCGTGGCGGTTGA 30368 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 |||||||| ||| | || || ||||| |||||| | || || || || || ||||||||| Sbjct 39347 GACAAGGAGGGCATTCCACCGGACCAACAGCGTTTGATCTTTGCAGGAAAGCAGTTGGAA 39406 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | ||| || || || |||||||||||||| || ||| | ||| |||| ||| Sbjct 39407 GATGGTCGTACTCTGTCTGACTACAACATTCAAAAAGAGTCAACTTTGCATTTGGTGCTT 39466 Query 31406 AGACT 31410 |||| Sbjct 39467 CGACT 39471 >seq30086 Length=500 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 |||||||| ||| | ||||| || ||||||||| |||| ||||| || || ||||||||| Sbjct 491 GACAAGGAGGGCATCCCGCCGGATCAGCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAA 432 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | ||| || ||| || || || ||||| |||||||| |||||| |||| ||| Sbjct 431 GATGGTCGCACTCTGTCCGACTACAATATACAAAAGGAATCGACCCTTCATTTGGTGCTT 372 Query 31406 AGACT 31410 |||| Sbjct 371 CGACT 367 >seq10174 Length=1708 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| || ||||| || |||||| | || |||||||| || Sbjct 1267 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAACCTTCT 1208 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | || | || || | ||| |||||||| || | || || |||||| Sbjct 1207 GACTCTATTGAGAATGTGAAGGCAAAAATTCAAGACAAGGAGGGTATCCCTCCGGACCAG 1148 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| || || ||||| | | || ||| || || Sbjct 1147 CAGCGTCTTATTTTTGCTGGCAAGCAATTAGAAGATGGGCGGTCCTTGTCCGACTACAAT 1088 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || |||||||| || ||| Sbjct 1087 ATTCAGAAGGAGTCAACGCTTCATCTTGTGCTT 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445598730540720