Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4589 242 5e-59 seq4951 111 2e-19 >seq4589 Length=3505 Score = 242 bits (268), Expect = 5e-59 Identities = 434/631 (69%), Gaps = 7/631 (1%) Strand=Plus/Plus Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 || || || || | ||| || || ||| ||| || || || || | ||| || | ||| Sbjct 2367 TGCTTGAAAATTAGACACGCAAAGTCGGTGTGAAGGCCTTCATCGCGACTGATCAGCTCG 2426 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 ||| || || || || ||||| || |||||||| || |||||||| || ||||| || Sbjct 2427 TTACTGAAGGTAAGACCAGGCATGAGACCACGCTTCTTGAGCCAAAAAATAGAAGCAAAC 2486 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 || ||||| ||||| | || || | ||||| || || | | | ||| | || Sbjct 2487 GAACCGGAGAAGAAAACACCCTCAATAGCAGCGAAAGCCACCACACGCTCAGCGTACGAT 2546 Query 33747 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 || || | || |||||||| | |||||||| |||||||| || || |||| | Sbjct 2547 GCCCTCTTATTCGCGATCCACTTAAGTGCCCAATCCGCCTTCTTAGCGACGCATGGCAGC 2606 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 |||| ||||| ||||| | | | | || || || ||||| ||||||||| Sbjct 2607 GTTTGAATGGCGTTAAATAAAAAATCACGCTCTGCCGGGTCCTTGACATATGTATCGATC 2666 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | |||| ||||||||| ||||||||||| |||| ||||| || | ||| || ||||| Sbjct 2667 AGAAGAGAATACATTTCAGAATGAATGTTCTCAACGGCCACTTGCATTCCATAAAAACAA 2726 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTA 33981 | |||||| | || || ||||| ||||||| ||| | ||||||||| || || | Sbjct 2727 CGAGCCTCAGGAACTTGAACTTCGTTACAAAA--ATTCAAGGTTAAATTTTCGTTAACGA 2784 Query 33982 TTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 34041 | |||||||| |||||||| || |||| |||| ||||| | | ||| | Sbjct 2785 TGCCATCACTCGCTGCAAAGAAGGCCAGAACATACGAAATAAAGTGTCGTTCACCATCAT 2844 Query 34042 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 34101 | || || | |||||| | | ||| || | || ||| || || || || |||||||| | Sbjct 2845 TGAGATTTTCCCAATCGGTAAGATCCTTCGCTAAATCAACCTCCTCAACCGTCCAAAAAG 2904 Query 34102 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAA 34161 | || | || || ||||| | | ||| |||||||||||||| ||||| | | |||| Sbjct 2905 AAGCGACAGCTTTCTTATAGAACTCCCAAATGTCATGATATTGTATTGGCATCACGACAA 2964 Query 34162 ATCTATTTGGATTTGGTGCAAGGATAGGTTC 34192 |||| ||||| || |||| | |||||| Sbjct 2965 ATCTTCGAGGATTGGGAACAAGTAAAGGTTC 2995 >seq4951 Length=3275 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || || || |||| ||||| | || || |||| | |||||| || ||||| Sbjct 2188 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2247 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || || || ||||| |||| | | | ||| ||||||||||| || | || || Sbjct 2248 TCGATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTGTGCATTAGGCGTC 2307 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || || ||||| | || || || || || | ||||| ||| |||| | |||||||||| Sbjct 2308 CCAGCGTTAAAGAGCGTTGGTGAGGCATGAATCAACCACTTTCCAGACATTAGATTGTAC 2367 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 |||||||| || | || | || ||||| |||| | ||| ||||| |||||| Sbjct 2368 GTCTCAATGGCAGCATCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACATG 2427 Query 63786 TGCTGAGGTCTTTC 63799 | ||||||||| || Sbjct 2428 TACTGAGGTCTCTC 2441 Score = 102 bits (112), Expect = 1e-16 Identities = 255/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 ||||| || ||||| || |||||||| || | || |||||||||| | | ||||| Sbjct 1779 TTCATGAACAGATCGGGGATCCAAAGCGCGAGGAAAAGATCTCTTGCACGAATCTCCTCA 1838 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||| | || | || || | ||| | |||||| || || | | Sbjct 1839 GCGCCAGTGTTCTTCCGCAATTCCACAAATTGCAGTACATCTGGATGCCATGGCTCAAGG 1898 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || | || | | ||||| |||||||| || || || |||| || | ||| ||| | Sbjct 1899 TAGACAGCGAAGGCGCCAGGTCGTTTGTTCCCACCTTGGTCTACATAACGAGCAGTGCTG 1958 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || | |||| || ||| || | || ||| || || |||||||| |||| ||| | Sbjct 1959 TTGAAGACTCGCAGCATCGGTACAAGACCATTCGACTCCCCATTGGTGCCGGCGATGAA- 2017 Query 63513 CCTCCACTGGCAC-GAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569 | | | || | | ||||| | || |||| |||| || || || || |||| ||| Sbjct 2018 CGTGCCCTTACTCCGAATACAATGAACATTGA--GACCGATCCCACCCGCACTTTTGGAG 2075 Query 63570 ATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA 63629 || | || || |||| | |||||| || ||||| || || || ||||| |||| | Sbjct 2076 ATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCCTCAATACTGTCATCCTTCATCGTG 2135 Query 63630 AGTAGAAAACAGCTAGACATTTG 63652 | | ||| ||||||||||| || Sbjct 2136 ACCAAAAAGCAGCTAGACATCTG 2158 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||||||||| ||||| ||||| |||| || ||| ||||| ||| | Sbjct 1433 ATCTCGGTGCAAAGATTTGAGCACTTTATAGTCCCTAGATGTTGATGATTGGACTTCCGG 1492 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 ||||| | |||||||||||| || || ||| | || ||||| |||||| Sbjct 1493 TTACAAGAATCCTTATAAAGCATAAAGGGATTGCCTGTTTCGATCTGA 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629580701982480