Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09-
25] 30,091 sequences; 103,664,560 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4589 174 1e-38
seq4951 114 1e-20
>seq4589
Length=3505
Score = 174 bits (192), Expect = 1e-38
Identities = 471/718 (66%), Gaps = 11/718 (2%)
Strand=Plus/Plus
Query 11479 TATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGT 11538
||| |||||| |||||| | ||||||||| || |||||||| || || | ||| ||||
Sbjct 2231 TATGTACTGACACATTAGGCGACAATTCATGCCGATAAGATCGACAGGTAAGGCATCTGT 2290
Query 11539 CAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGA 11598
| || || |||||| | || || || | || || || ||| || ||
Sbjct 2291 GAGGAATTCACATTCTATGCTGACGGCCTCCGTCATAAT----GTCATACACTCTTTCTG 2346
Query 11599 TGGTGGATGTAATAA--ATGT--TTAAACATTAAACACGCAAAATCACAATGTAAACCTT 11654
|| | | || | | |||| || || |||| ||||||||| || || | ||||
Sbjct 2347 CTGTAGGTTTATTGACAATGTGCTTGAAAATTAGACACGCAAAGTCGGTGTGAAGGCCTT 2406
Query 11655 CGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttA 11714
| || | ||| || || || ||| || || | || ||||| | || || || || |
Sbjct 2407 CATCGCGACTGATCAGCTCGTTACTGAAGGTAAGACCAGGCATGAGACCACGCTTCTTGA 2466
Query 11715 TCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTA 11774
|||||| |||| |||||| ||||| || ||||| | ||||| | ||| || || || |
Sbjct 2467 GCCAAAAAATAGAAGCAAACGAACCGGAGAAGAAAACACCCTCAATAGCAGCGAAAGCCA 2526
Query 11775 CTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTT 11831
| || | || | || | || | || | | ||||| || |||||||| || |
Sbjct 2527 CCACACGCTCAGCGTACGATGCCCTCTTATTCGCGATCCACTTAAGTGCCCAATCCGCCT 2586
Query 11832 TCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTAT 11891
|||| |||||| || |||| || |||||||||||| ||| |
Sbjct 2587 TCTTAGCGACGCATGGCAGCGTTTGAATGGCGTTAAATAAAAAATCACGCTCTGCCGGGT 2646
Query 11892 CTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTA 11951
| | ||||||||||| || | | | ||||||||| |||||||| || || | || |
Sbjct 2647 CCTTGACATATGTATCGATCAGAAGAGAATACATTTCAGAATGAATGTTCTCAACGGCCA 2706
Query 11952 TTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCG 12011
||| | |||||| ||||| || ||||| | | || || || | |||| | |
Sbjct 2707 CTTGCATTCCATAAAAACAACGAGCCTCAGGAACTTGAACTTCGTTACAAAAATTCAAGG 2766
Query 12012 CTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAA 12071
|||||| || || || || |||||||| | |||||| || || || | || ||||
Sbjct 2767 TTAAATTTTCGTTAACGATGCCATCACTCGCTGCAAAGAAGGCCAGAACATACGAAATAA 2826
Query 12072 AGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTT 12131
||| | ||| | | | | | || |||||||| | ||| || | |||||| || |
Sbjct 2827 AGTGTCGTTCACCATCATTGAGATTTTCCCAATCGGTAAGATCCTTCGCTAAATCAACCT 2886
Query 12132 CTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATA 12189
| ||||| ||||||||| || || | || ||||| | | ||| || ||||||||
Sbjct 2887 CCTCAACCGTCCAAAAAGAAGCGACAGCTTTCTTATAGAACTCCCAAATGTCATGATA 2944
>seq4951
Length=3275
Score = 114 bits (126), Expect = 1e-20
Identities = 180/255 (71%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355
|| || ||||| ||| ||| || || | || || ||||| | ||| || |||| ||
Sbjct 2188 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2247
Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAAT-GGAGT 38414
|| |||||||||||||| || | | | ||| || |||||||| || ||| | || ||
Sbjct 2248 TCGATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTG-TGCATTAGGCGT 2306
Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATA 38474
|| |||||||| | || || || ||||| || ||||| ||| | |||| ||| ||
Sbjct 2307 CCCAGCGTTAAAGAGCGTTGGTGAGGCATGAATCAACCACTTTCCAGACATTAGATTGTA 2366
Query 38475 TGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCAT 38534
|| || || || |||| | || ||||||||||||||| || |||| ||| | |||
Sbjct 2367 CGTCTCAATGGCAGCATCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACAT 2426
Query 38535 ATGTTGTGGTCTTTC 38549
| || ||||| ||
Sbjct 2427 GTACTGAGGTCTCTC 2441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468348570253040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |