Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4589 174 1e-38 seq4951 114 1e-20 >seq4589 Length=3505 Score = 174 bits (192), Expect = 1e-38 Identities = 471/718 (66%), Gaps = 11/718 (2%) Strand=Plus/Plus Query 11479 TATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGT 11538 ||| |||||| |||||| | ||||||||| || |||||||| || || | ||| |||| Sbjct 2231 TATGTACTGACACATTAGGCGACAATTCATGCCGATAAGATCGACAGGTAAGGCATCTGT 2290 Query 11539 CAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGA 11598 | || || |||||| | || || || | || || || ||| || || Sbjct 2291 GAGGAATTCACATTCTATGCTGACGGCCTCCGTCATAAT----GTCATACACTCTTTCTG 2346 Query 11599 TGGTGGATGTAATAA--ATGT--TTAAACATTAAACACGCAAAATCACAATGTAAACCTT 11654 || | | || | | |||| || || |||| ||||||||| || || | |||| Sbjct 2347 CTGTAGGTTTATTGACAATGTGCTTGAAAATTAGACACGCAAAGTCGGTGTGAAGGCCTT 2406 Query 11655 CGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttA 11714 | || | ||| || || || ||| || || | || ||||| | || || || || | Sbjct 2407 CATCGCGACTGATCAGCTCGTTACTGAAGGTAAGACCAGGCATGAGACCACGCTTCTTGA 2466 Query 11715 TCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTA 11774 |||||| |||| |||||| ||||| || ||||| | ||||| | ||| || || || | Sbjct 2467 GCCAAAAAATAGAAGCAAACGAACCGGAGAAGAAAACACCCTCAATAGCAGCGAAAGCCA 2526 Query 11775 CTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTT 11831 | || | || | || | || | || | | ||||| || |||||||| || | Sbjct 2527 CCACACGCTCAGCGTACGATGCCCTCTTATTCGCGATCCACTTAAGTGCCCAATCCGCCT 2586 Query 11832 TCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTAT 11891 |||| |||||| || |||| || |||||||||||| ||| | Sbjct 2587 TCTTAGCGACGCATGGCAGCGTTTGAATGGCGTTAAATAAAAAATCACGCTCTGCCGGGT 2646 Query 11892 CTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTA 11951 | | ||||||||||| || | | | ||||||||| |||||||| || || | || | Sbjct 2647 CCTTGACATATGTATCGATCAGAAGAGAATACATTTCAGAATGAATGTTCTCAACGGCCA 2706 Query 11952 TTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCG 12011 ||| | |||||| ||||| || ||||| | | || || || | |||| | | Sbjct 2707 CTTGCATTCCATAAAAACAACGAGCCTCAGGAACTTGAACTTCGTTACAAAAATTCAAGG 2766 Query 12012 CTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAA 12071 |||||| || || || || |||||||| | |||||| || || || | || |||| Sbjct 2767 TTAAATTTTCGTTAACGATGCCATCACTCGCTGCAAAGAAGGCCAGAACATACGAAATAA 2826 Query 12072 AGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTT 12131 ||| | ||| | | | | | || |||||||| | ||| || | |||||| || | Sbjct 2827 AGTGTCGTTCACCATCATTGAGATTTTCCCAATCGGTAAGATCCTTCGCTAAATCAACCT 2886 Query 12132 CTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATA 12189 | ||||| ||||||||| || || | || ||||| | | ||| || |||||||| Sbjct 2887 CCTCAACCGTCCAAAAAGAAGCGACAGCTTTCTTATAGAACTCCCAAATGTCATGATA 2944 >seq4951 Length=3275 Score = 114 bits (126), Expect = 1e-20 Identities = 180/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || || ||||| ||| ||| || || | || || ||||| | ||| || |||| || Sbjct 2188 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2247 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAAT-GGAGT 38414 || |||||||||||||| || | | | ||| || |||||||| || ||| | || || Sbjct 2248 TCGATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTG-TGCATTAGGCGT 2306 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATA 38474 || |||||||| | || || || ||||| || ||||| ||| | |||| ||| || Sbjct 2307 CCCAGCGTTAAAGAGCGTTGGTGAGGCATGAATCAACCACTTTCCAGACATTAGATTGTA 2366 Query 38475 TGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCAT 38534 || || || || |||| | || ||||||||||||||| || |||| ||| | ||| Sbjct 2367 CGTCTCAATGGCAGCATCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACAT 2426 Query 38535 ATGTTGTGGTCTTTC 38549 | || ||||| || Sbjct 2427 GTACTGAGGTCTCTC 2441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468348570253040