Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4589 219 6e-52 seq4951 116 5e-21 >seq4589 Length=3505 Score = 219 bits (242), Expect = 6e-52 Identities = 486/722 (67%), Gaps = 13/722 (2%) Strand=Plus/Plus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || ||||| | || || | || | || || ||||| ||| || Sbjct 2252 ACAATTCATGCCGATAAGATCGACAGGTAAGGCATCTGTGAGGAATTCACATTCTATGCT 2311 Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGGTGGAT--ACAATAAATG 36144 ||| || || || ||||| ||| ||| ||||| | | ||| || ||||| || Sbjct 2312 GACGGCCTCCGTCATAATGTCATAC-ACTCTTTCTGCTGTAGGTTTATTGACAATG--TG 2368 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 || || || | ||| || || ||| ||| || || || || | ||| || | ||||| Sbjct 2369 CTTGAAAATTAGACACGCAAAGTCGGTGTGAAGGCCTTCATCGCGACTGATCAGCTCGTT 2428 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 || || || || ||||| || |||||||| || |||||||| || || ||||| || Sbjct 2429 ACTGAAGGTAAGACCAGGCATGAGACCACGCTTCTTGAGCCAAAAAATAGAAGCAAACGA 2488 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 || || ||||||| || || | || || || || | | | ||| | || || Sbjct 2489 ACCGGAGAAGAAAACACCCTCAATAGCAGCGAAAGCCACCACACGCTCAGCGTACGATGC 2548 Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 || | || |||||||| | |||||||| |||||||| || || |||| || Sbjct 2549 CCTCTTATTCGCGATCCACTTAAGTGCCCAATCCGCCTTCTTAGCGACGCATGGCAGCGT 2608 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 | || || ||||| | | | | || || || ||||||||||| |||| Sbjct 2609 TTGAATGGCGTTAAATAAAAAATCACGCTCTGCCGGGTCCTTGACATATGTATCGATCAG 2668 Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501 |||| ||||||||| ||||||||||| |||| ||||| ||| | ||| || ||||| | Sbjct 2669 AAGAGAATACATTTCAGAATGAATGTTCTCAACGGCCACTTGCATTCCATAAAAACAACG 2728 Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATT 36559 |||||| | || || ||||| ||||||| ||| | ||||||||| || || || Sbjct 2729 AGCCTCAGGAACTTGAACTTCGTTACAAAA--ATTCAAGGTTAAATTTTCGTTAACGATG 2786 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 || ||||| |||||||| || |||| |||| ||||| | | ||| | Sbjct 2787 CCATCACTCGCTGCAAAGAAGGCCAGAACATACGAAATAAAGTGTCGTTCACCATCATTG 2846 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || || | |||||| | | ||| || | || ||| || || || || |||||||| || Sbjct 2847 AGATTTTCCCAATCGGTAAGATCCTTCGCTAAATCAACCTCCTCAACCGTCCAAAAAGAA 2906 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 36739 || | || || ||||| | | ||| |||||||||||||| ||||| | | |||||| Sbjct 2907 GCGACAGCTTTCTTATAGAACTCCCAAATGTCATGATATTGTATTGGCATCACGACAAAT 2966 Query 36740 CT 36741 || Sbjct 2967 CT 2968 >seq4951 Length=3275 Score = 116 bits (128), Expect = 5e-21 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || || || || |||| ||||| | || || |||| | ||| || || |||||| Sbjct 2188 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2247 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 66458 || ||||| |||||| |||| | | | ||| ||||||||||| || | | || Sbjct 2248 TCGATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTGTGCATTAGGCGTC 2307 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || || ||||| | || || || || || | ||||| ||| |||| | |||||||||| Sbjct 2308 CCAGCGTTAAAGAGCGTTGGTGAGGCATGAATCAACCACTTTCCAGACATTAGATTGTAC 2367 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 |||||||| || | || | || ||||| |||| | ||| ||||| |||||| Sbjct 2368 GTCTCAATGGCAGCATCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACATG 2427 Query 66579 TGCTGAGGTCTTTC 66592 | ||||||||| || Sbjct 2428 TACTGAGGTCTCTC 2441 Score = 107 bits (118), Expect = 3e-18 Identities = 308/469 (66%), Gaps = 6/469 (1%) Strand=Plus/Plus Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 66039 ||||||| || || ||||| || | | ||||| ||||||| ||| ||| || | Sbjct 1693 GTTCGAAATCCTCCCCCCAGCAATCAGCAAGACCAGGGCATTCATGGGGATCCATAAAGG 1752 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 ||| || || | || | ||||| || ||||| || |||||||| || | | Sbjct 1753 TCCATGAACCACCAGTTTCAACCCTCTTCATGAACAGATCGGGGATCCAAAGCGCGAGGA 1812 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 | | |||||| | | | ||||| || || ||||| | || | || || Sbjct 1813 AAAGATCTCTTGCACGAATCTCCTCAGCGCCAGTGTTCTTCCGCAATTCCACAAATTGCA 1872 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 | ||| |||||| || || | ||| | || | | ||||| |||||||| || | Sbjct 1873 GTACATCTGGATGCCATGGCTCAAGGTAGACAGCGAAGGCGCCAGGTCGTTTGTTCCCAC 1932 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 | || |||| || | ||| ||| | || | |||| || ||| || | || |||||| | Sbjct 1933 CTTGGTCTACATAACGAGCAGTGCTGTTGAAGACTCGCAGCATCGGTACAAGACCATTCG 1992 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCAC-GAATATTACTAA--TTGATA 66336 | |||||||| |||| ||| | | || ||| | | ||||| | || |||| Sbjct 1993 ACTCCCCATTGGTGCCGGCGATGAACGTGCC-CTTACTCCGAATACAATGAACATTGA-- 2049 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 |||| || || || || |||| ||||| | || || |||| | ||| || || |||| Sbjct 2050 GACCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGC 2109 Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 66445 |||| ||||| |||||| |||| | | | ||| ||||||||||| || Sbjct 2110 CCTCAATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTG 2158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657925236528440