Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq210 122 9e-23 seq2251 96.9 3e-15 seq30086 89.7 5e-13 seq10174 82.4 8e-11 >seq210 Length=64943 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| ||||||| || || |||| || ||||| ||||||||||| || || Sbjct 42399 GCCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGA 42340 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || | ||||||||||||| |||| |||||||| || || || || Sbjct 42339 CAGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGG 42280 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | | || | ||||||| Sbjct 42279 AATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTCCA 42221 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||||||| || | ||||| ||||| |||||||| Sbjct 42220 CCTCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCAT 42172 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || ||||| ||||| || || || ||| || |||| ||||| Sbjct 39690 ACCAAATGAAGAGTCGACTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCC 39631 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| ||||| ||| | |||| ||| ||||| || || || ||||| || ||||| | Sbjct 39630 AACTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGG 39571 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| || | | || | | ||| | ||||||||||| | ||| | ||||||| Sbjct 39570 ATTTTCGCCTTCACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTG 39511 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| ||| || || ||||||||||| Sbjct 39510 CCAGTCAGCGTCTTCACAAATATTTGCAT 39482 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || || || |||| ||||| ||||| ||||| Sbjct 30402 GTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGTGCGACCATCTTCCAGCTGCTTACCC 30461 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | |||| ||| ||||| || || || ||||| || ||||| ||| | || | || Sbjct 30462 GCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTC-TTGAATCTTCGCCTT 30520 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | | ||| | ||||||||||| | ||| | ||||| || || | ||| Sbjct 30521 CACATTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTAATAGTCTTCCCCGTAAGCGT 30580 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 30581 CTTCACAAATATTTGCAT 30598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||| || || || || || |||| || | ||||| | ||| ||||| Sbjct 30630 GTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCA-TCTTCCAACTGCTTACC 30688 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| | ||| || || || || || ||||| || ||||| ||| || || Sbjct 30689 GGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTT 30748 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | | ||| | ||||||||||| | ||| | ||||||||| |||||||| Sbjct 30749 CACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTGCCAGTCAACGT 30808 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 30809 CTTCACAAATATTTGCAT 30826 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||||||||| || || || || | ||||| | ||| || || Sbjct 39450 GTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATCTTCCAACTGCTTTCCT 39391 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| ||| || || || || || ||||| || ||||| ||| || || Sbjct 39390 GCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTC 39331 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | | ||| | ||||||||||| | || | |||||||| ||||||||| Sbjct 39330 ACATTCTCAATCGAGTCACTTGGCTCCACCTCCAATGTAATAGTCTTGCCCGTCAACGTT 39271 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 39270 TTCACAAAGATTTGCAT 39254 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||| || || || || || |||| || | ||||| | ||| ||||| Sbjct 40134 GTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCA-TCTTCCAACTGCTTACC 40076 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| | ||| || || || || || ||||| || ||||| ||| || || Sbjct 40075 GGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTT 40016 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | | ||| | ||||||||||| | ||| | ||||||||| |||||||| Sbjct 40015 CACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTGCCAGTCAACGT 39956 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 39955 CTTCACAAATATTTGCAT 39938 >seq2251 Length=6394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||||| | |||||| | || | ||| || || ||||||||||| || ||| Sbjct 1230 CCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAG 1171 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || || | ||| || || ||| |||| || |||||||| || || ||| Sbjct 1170 AGAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGGTGGT 1111 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| |||| | ||| | |||| || | | |||| | ||||| | Sbjct 1110 ATGCCCTCCTTGTC-TTGAATTTTCGCTTT-GACGTTCTCAATAGAGTCGCTAGGCTCAA 1053 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | || || || || | ||||| || || |||||||| Sbjct 1052 CCTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCAT 1004 >seq30086 Length=500 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||| || || || || || |||| || | ||||| | ||| ||||| Sbjct 160 GTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCA-TCTTCCAACTGCTTACC 218 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| | ||| || || || || || ||||| || ||||| ||| || || Sbjct 219 GGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTT 278 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | | ||| | ||||||||||| | ||| | ||||||||| |||||||| Sbjct 279 CACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTGCCAGTCAACGT 338 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 339 CTTCACAAATATTTGCAT 356 >seq10174 Length=1708 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| || ||||| || || ||| || | | | ||||| | || Sbjct 1065 TGAAGCGTTGACTCCTTCTGAATATTGTAGTCGGACAAGGACCGCCCATCTTCTAATTGC 1124 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | || ||||| ||||| || ||||| || || || ||||| ||| |||| Sbjct 1125 TTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCT-TGAATTTT 1183 Query 139682 TGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || || | | || | | ||| | || || ||||||| ||| | ||||||||||| Sbjct 1184 TGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAACCTCAAGGGTGATGGTCTTGCCGGT 1243 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || || ||||| Sbjct 1244 GAGAGTTTTGACAAAAATCTGCAT 1267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495877411727200