Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4589 179 5e-40 seq3457 87.8 3e-12 >seq4589 Length=3505 Score = 179 bits (198), Expect = 5e-40 Identities = 505/761 (66%), Gaps = 27/761 (4%) Strand=Plus/Minus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 ||||||||||||||||| | || || || ||| || || ||||||||||| || ||| Sbjct 2944 TATCATGACATTTGGGAGTTCTATAAGAAAGCTGTCGCTTCTTTTTGGACGGTTGAGGAG 2885 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || ||| | | ||||| || ||||||||| | || | | ||| ||| ||| | Sbjct 2884 GTTGATTTAGCGAAGGATCTTACCGATTGGGAAAATC---TCAATGATGGTGAACGACAC 2828 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 ||||| ||| | || ||||||||||||| | ||||| ||||| ||||| ||| | Sbjct 2827 TTTATTTCGTATGTTCTGGCCTTCTTTGCAGCGAGTGATGGCATCGTTAACGAAAATTTA 2768 Query 125190 ---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATT 125245 |||| | || | | | |||| | |||| |||| |||| | ||||| ||| | Sbjct 2767 ACCTTGA-ATTTTTGTAACGA-AGTTCAAG-TTCCTGAGGC-TCGTTGTTTTTATGGAAT 2712 Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||| | |||||||| | || || |||||||| ||| ||||| || | || | Sbjct 2711 GCAAGTGGCCGTTGAGAACATTCATTCTGAAATGTATTCTCTTCTGATCGATACATATGT 2652 Query 125306 TCGCGATCCGCAA---CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTAT 125362 || ||| | ||| | | | |||||||| || | ||| |||| | | Sbjct 2651 CAAGGACCCGGCAGAGCGTGATT---TTTTATTTAACGCCATTCAAACGCTGCCATGCGT 2595 Query 125363 ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGA 125422 ||| ||||| | |||| || |||||||| | | | | | |||||||| || Sbjct 2594 CGCTAAGAAGGCGGATTGGGCACTTAAGTGGATCGCGAATAAGAGGGCATCGTACGCTGA 2535 Query 125423 CAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCAT 125482 | ||||||| ||||| || | ||||| | ||||| || ||| ||||| | || Sbjct 2534 GCGTGTGGTGGCTTTCGCTGCTATTGAGGGTGTTTTCTTCTCCGGTTCGTTTGCTTCTAT 2475 Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||||||||||||||||| || |||||||| || || || |||||||||| | || Sbjct 2474 TTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTTACCTTCAGTAACGAGCTGATCAG 2415 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCC 125602 ||| || || ||||| ||| |||||||| |||| | || ||| | | ||| Sbjct 2414 TCGCGATGAAGGCCTTCACACCGACTTTGCGTGTCTAATTTT---CAAGCA-CATTGTC- 2360 Query 125603 CGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662 | | | | |||| |||| || ||||| | || || ||||| || ||||| Sbjct 2359 --AATAAACCTACAGC--AGAAAGAGTGTATGACATTATGACGGAGGCCGTCAGCATAGA 2304 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAAT 125722 | || || || || || || |||| ||| | || |||||||| || ||||| Sbjct 2303 ATGTGAATTCCTCACAGATGCCTTACCTGTCGATCTTATCGGCATGAATTGTCGCCTAAT 2244 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 ||| |||||||| |||||| || ||||| || || |||| Sbjct 2243 GTGTCAGTACATAAGGTTTGTTGCTGATCGGCTGCT-TACG 2204 >seq3457 Length=4417 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 134236 ATACGCTCACAAATCAGTTGTGCGATGCGATCACCC--TTTGACACTACAAAGTCGTCAT 134293 ||||||||||| || ||||| |||||||||||||| | |||| || ||| || || | Sbjct 2847 ATACGCTCACATATGAGTTGAGCGATGCGATCACCACGTCTGACG-TAAAAA-TCTTCGT 2790 Query 134294 CGGAATGGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGG 134353 || | ||| ||||| ||||| ||| || || ||||| | || || || || | Sbjct 2789 CGCCAAAGTTGAAGAGAACCACCATAATATTACCGCGGTAGTCTGGATCAACAACTCCAG 2730 Query 134354 CTCCGACGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGC 134413 | || ||||||||||||| ||| |||||| | || ||||| |||| ||| |||| Sbjct 2729 CACCTACGTCGATTCCGTGCTTCAAAGCCAGTCCGCTACGGGGAGCTATCCGACCATAGC 2670 Query 134414 AACC 134417 | || Sbjct 2669 ATCC 2666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740780459845160