Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09-
25] 30,091 sequences; 103,664,560 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq210 120 2e-22
seq2251 107 1e-18
>seq210
Length=64943
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||||| ||| | | || ||||||||||| || || ||||| |||||||| ||
Sbjct 42400 TGCCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCG 42341
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
||| | | |||| || || ||||| ||||| | || | |||||||||||| ||
Sbjct 42340 ACAGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTG 42281
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
|||| || || ||||| ||| || ||| ||| | ||||| | ||| || || |
Sbjct 42280 GAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTCCA 42221
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | |||||| || || || || |||||||| || || ||||||||
Sbjct 42220 CCTCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCAT 42172
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||||||||| || || |||||||| ||||| ||| ||| | | | |||||
Sbjct 30846 ACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCC 30905
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || || ||| | || ||||| || || || || || || || ||||| |
Sbjct 30906 AACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTGA 30965
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||||||| | || |||| ||| || || || || | ||||| || ||
Sbjct 30966 ATCTTAGCCTTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAATAGTCTTC 31025
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||| ||||||||
Sbjct 31026 CCCGTTAGCGTCTTCACAAAGATTTGCAT 31054
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||||||||| || || |||||||| ||||| ||| ||| | | | |||||
Sbjct 39918 ACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCC 39859
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || || ||| | || ||||| || || || || || || || ||||| |
Sbjct 39858 AACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTGA 39799
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || |||| ||| || || || || | ||||| || ||
Sbjct 39798 ATCTTCGCCTTCACATTCTCAATGGAATCACTGGGCTCCACCTCCAGTGTAATTGTCTTG 39739
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||| ||||||||
Sbjct 39738 CCAGTTAGCGTCTTCACAAATATTTGCAT 39710
>seq2251
Length=6394
Score = 107 bits (118), Expect = 1e-18
Identities = 174/247 (70%), Gaps = 5/247 (2%)
Strand=Plus/Minus
Query 15121 TCAGTAACCATGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTG 15180
|||||| ||| || || |||| | ||| ||||| | ||| || || || || |||||
Sbjct 1243 TCAGTATCCA---CTTCCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTG 1187
Query 15181 TATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACG 15240
|||||||| ||| ||| ||| | | || || || || ||||| || | || | ||
Sbjct 1186 AATGTTGTAGTCGGAGAGAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCG 1127
Query 15241 TTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGG 15299
||| ||||| ||| || || || ||||| |||||| | |||| || | || || |
Sbjct 1126 TTGCTGGTCTGGTGGTATGCCCTCCTTGTCTTGAATTTT-CGCTTTGACGTTCTCAATAG 1068
Query 15300 TATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTT 15359
|||||| || || || | || |||||||| || || || ||||| ||||||||||
Sbjct 1067 AGTCGCTAGGCTCAACCTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTT 1008
Query 15360 GCATATT 15366
|||| ||
Sbjct 1007 GCATTTT 1001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362046376550631
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |