Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq210 120 2e-22 seq2251 107 1e-18 >seq210 Length=64943 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| ||| | | || ||||||||||| || || ||||| |||||||| || Sbjct 42400 TGCCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCG 42341 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || || ||||| ||||| | || | |||||||||||| || Sbjct 42340 ACAGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTG 42281 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || || ||||| ||| || ||| ||| | ||||| | ||| || || | Sbjct 42280 GAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTCCA 42221 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||| || || || || |||||||| || || |||||||| Sbjct 42220 CCTCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCAT 42172 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || |||||||| ||||| ||| ||| | | | ||||| Sbjct 30846 ACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCC 30905 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || ||| | || ||||| || || || || || || || ||||| | Sbjct 30906 AACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTGA 30965 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||||||| | || |||| ||| || || || || | ||||| || || Sbjct 30966 ATCTTAGCCTTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAATAGTCTTC 31025 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 31026 CCCGTTAGCGTCTTCACAAAGATTTGCAT 31054 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || |||||||| ||||| ||| ||| | | | ||||| Sbjct 39918 ACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCC 39859 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || ||| | || ||||| || || || || || || || ||||| | Sbjct 39858 AACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTGA 39799 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || |||| ||| || || || || | ||||| || || Sbjct 39798 ATCTTCGCCTTCACATTCTCAATGGAATCACTGGGCTCCACCTCCAGTGTAATTGTCTTG 39739 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 39738 CCAGTTAGCGTCTTCACAAATATTTGCAT 39710 >seq2251 Length=6394 Score = 107 bits (118), Expect = 1e-18 Identities = 174/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 15121 TCAGTAACCATGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTG 15180 |||||| ||| || || |||| | ||| ||||| | ||| || || || || ||||| Sbjct 1243 TCAGTATCCA---CTTCCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTG 1187 Query 15181 TATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACG 15240 |||||||| ||| ||| ||| | | || || || || ||||| || | || | || Sbjct 1186 AATGTTGTAGTCGGAGAGAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCG 1127 Query 15241 TTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGG 15299 ||| ||||| ||| || || || ||||| |||||| | |||| || | || || | Sbjct 1126 TTGCTGGTCTGGTGGTATGCCCTCCTTGTCTTGAATTTT-CGCTTTGACGTTCTCAATAG 1068 Query 15300 TATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTT 15359 |||||| || || || | || |||||||| || || || ||||| |||||||||| Sbjct 1067 AGTCGCTAGGCTCAACCTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTT 1008 Query 15360 GCATATT 15366 |||| || Sbjct 1007 GCATTTT 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362046376550631