Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq210 113 3e-20 seq30086 107 1e-18 seq2251 96.9 2e-15 >seq210 Length=64943 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || |||| ||||||||| | || ||||| ||||| || ||||| || ||| Sbjct 42398 CCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAC 42339 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || | ||| ||||| || || ||| ||| || | |||||| ||||||| || Sbjct 42338 AGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGA 42279 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||| || || || |||| | || || | | |||| || | || | || Sbjct 42278 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTCCACC 42219 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||| || || ||||||||||| ||||| |||||||| Sbjct 42218 TCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCAT 42172 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| |||||||| |||||||||||||| |||||||| || || || || Sbjct 30617 CACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTC 30676 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| ||||| || || |||||||| || ||||||| || ||||| || || || Sbjct 30677 CAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 30736 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| || || | | |||| ||| | || | || |||| || ||||| Sbjct 30737 GATCTTCGCC---TTCACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGT 30793 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | || || || || ||||||||| Sbjct 30794 CTTGCCAGTCAACGTCTTCACAAATATTTGCATG 30827 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | ||||| || |||||||||||||| || |||| | || | || || Sbjct 30845 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 30904 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| ||||| || || |||||||| ||||| |||| || ||||| || || || Sbjct 30905 CAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTG 30964 Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| ||||| | | ||| | || |||| | ||| |||||||| || || Sbjct 30965 AATCTTAGCC---TTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAATAGT 31021 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || || || || ||||||||| Sbjct 31022 CTTCCCCGTTAGCGTCTTCACAAAGATTTGCATG 31055 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| |||||||| |||||||||||||| |||||||| || || || || Sbjct 40147 CACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTC 40088 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| ||||| || || |||||||| || ||||||| || ||||| || || || Sbjct 40087 CAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 40028 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| || || | | |||| ||| | || | || |||| || ||||| Sbjct 40027 GATCTTCGCC---TTCACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGT 39971 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | || || || || ||||||||| Sbjct 39970 CTTGCCAGTCAACGTCTTCACAAATATTTGCATG 39937 Score = 104 bits (114), Expect = 1e-17 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | |||||||| |||||||||||||| || |||| | || | || || Sbjct 39691 CACCAAATGAAGAGTCGACTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 39632 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| ||||| || |||||| ||||| |||||||||| || ||||| || || || Sbjct 39631 CAACTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 39572 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| || || | | |||| ||| | || | || |||| || ||||| Sbjct 39571 GATTTTCGCC---TTCACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGT 39515 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || || ||||||||| Sbjct 39514 CTTGCCAGTCAGCGTCTTCACAAATATTTGCATG 39481 Score = 102 bits (112), Expect = 5e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| || ||||||||||| || ||||| ||||||| | | | || || Sbjct 39463 CACCAAATGCAAAGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATCTTC 39404 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| |||||||| ||| || ||||| || ||||||| || ||||| || || || Sbjct 39403 CAACTGCTTTCCTGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 39344 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| || || | | ||||| ||| | || | || |||| || || || Sbjct 39343 GATCTTCGCC---TTCACATTCTCAATCGAGTCACTTGGCTCCACCTCCAATGTAATAGT 39287 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| | ||||| || || |||||||| Sbjct 39286 CTTGCCCGTCAACGTTTTCACAAAGATTTGCAT 39254 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | ||||| || |||||||||||||| || |||| | || | || || Sbjct 39919 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 39860 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| ||||| || || |||||||| ||||| |||| || ||||| || || || Sbjct 39859 CAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTG 39800 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| | || || | | ||| | || |||| | || ||||| || || || || Sbjct 39799 AATCTTCGCCTTCACATTCTCAATGGAATCACTGGGCTCCACCTCCAGTGTAATTGTCTT 39740 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || ||||||||| Sbjct 39739 GCCAGTTAGCGTCTTCACAAATATTTGCATG 39709 >seq30086 Length=500 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| |||||||| |||||||||||||| |||||||| || || || || Sbjct 147 CACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTC 206 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| ||||| || || |||||||| || ||||||| || ||||| || || || Sbjct 207 CAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 266 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| || || | | |||| ||| | || | || |||| || ||||| Sbjct 267 GATCTTCGCC---TTCACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGT 323 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | || || || || ||||||||| Sbjct 324 CTTGCCAGTCAACGTCTTCACAAATATTTGCATG 357 >seq2251 Length=6394 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || | ||| || | ||| | ||||| || ||||| || ||||| || || Sbjct 1230 CCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAG 1171 Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| | || ||||| ||||| || ||| || | ||||||||||| | Sbjct 1170 A----GAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGG 1115 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || || ||| | ||| || | | ||| | |||| | || | Sbjct 1114 TGGTATGCCCTCCTTGTCTTGAATTTTCGCTTTGACGTTCTCAATAGAGTCGCTAGGCTC 1055 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || ||||| || ||||| || ||||| ||||| || ||||||||||| || Sbjct 1054 AACCTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCATTTT 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318660693395718