Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq210 82.4 5e-11 >seq210 Length=64943 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||||||| || || || ||||| ||||| || ||| | | || || |||| | Sbjct 39919 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTG-CGACCATCTT 39861 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 |||| || || || || || || || || ||||| ||| | || | || || || ||| Sbjct 39860 CCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTT 39801 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| || || || | ||| | ||| |||||||| || | |||||||| | Sbjct 39800 GAATCTTCGCCTTCACATTCTCAATGGAATCACTGGGCTCCACCTCCAGTGTAATTGTCT 39741 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || |||| ||||||||||||||||||||| Sbjct 39740 TGCCAGTTAGCGTCTTCACAAATATTTGCATG 39709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354647490969468