Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09-
25] 30,091 sequences; 103,664,560 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq2251 113 4e-20
seq210 87.8 2e-12
seq25 87.8 2e-12
seq10174 84.2 2e-11
>seq2251
Length=6394
Score = 113 bits (124), Expect = 4e-20
Identities = 164/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||||||||||| ||||| || | ||| || || ||||| ||||| |||||||| |||
Sbjct 1232 TTCCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCGG 1173
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| |||| ||| ||||| || ||||| ||| | ||||| | || || || |
Sbjct 1172 AGAGAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGGTG 1113
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||| || ||||| |||||| ||| || | ||| ||| |||| ||| ||
Sbjct 1112 GTATGCCCTCCTTGTCTTGAATTTTCGCTTTGACGTTCTCAATAGAGTCGCTAGGCTCAA 1053
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211
|| | || |||||||| || || | ||||| |||||||||||||||||
Sbjct 1052 CCTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCATTTT 1001
>seq210
Length=64943
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| | || || |||||||| |||||||| || || ||| | ||||||
Sbjct 39463 CACCAAATGCAAAGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATCTTC 39404
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
||| || || || ||| | || | | |||||| || || | ||| || |||||
Sbjct 39403 CAACTGCTTTCCTGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 39344
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|| || ||||| | ||| || || | || ||| |||| ||||| || ||
Sbjct 39343 GATCTTCGCCTTCACATTCTCAATCGAGTCACTTGGCTCCACCTCCAATGTAATAGTCTT 39284
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAAC 20216
||| ||||||||||| ||||| |||||||| | ||||
Sbjct 39283 GCCCGTCAACGTTTTCACAAAGATTTGCATCCTGAAAC 39246
>seq25
Length=187393
Score = 87.8 bits (96), Expect = 2e-12
Identities = 103/139 (74%), Gaps = 8/139 (6%)
Strand=Plus/Minus
Query 22347 GCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCACGTCGGCAGGCGA 22406
|||||| ||||| |||||||||||||| ||||||| |||| || || || || || |
Sbjct 97946 GCACGGATTTCATGTGCACGAATTTGGAGACACAACAGATGGCTGTACATCTGCCGGTGC 97887
Query 22407 GCACTTTAACCCTACGCACCGGCAA----CATGGCGCGCCTGACGCTGCGGAGCGTCACG 22462
||||||||||| | |||||| ||||| || ||||| || || ||||| || |
Sbjct 97886 TCACTTTAACCC----CCACGGCAAAAACCATGGTGCTCCTGATGCAGCTGAGCGGCATG 97831
Query 22463 TCGGCGATTTGGGCAACGT 22481
| || ||| | || |||||
Sbjct 97830 TTGGGGATCTTGGTAACGT 97812
>seq10174
Length=1708
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112
|||||| ||||| ||||| ||| ||||||| | ||| || || || | || || ||
Sbjct 1112 ATCTTCTAATTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTT 1171
Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAAT 20172
||| ||||||| ||||| | ||| ||| || |||||| || | ||| ||
Sbjct 1172 GTCTTGAATTTTTGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAACCTCAAGGGTGAT 1231
Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| |||||||| | |||||||||||||| |||||
Sbjct 1232 GGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 1267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419433323081571
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |