Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4589 158 3e-33 seq210 140 7e-28 seq10174 132 1e-25 >seq4589 Length=3505 Score = 158 bits (174), Expect = 3e-33 Identities = 475/723 (66%), Gaps = 18/723 (2%) Strand=Plus/Minus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| | | |||||||| || ||| || ||| | | || || | || || Sbjct 2968 AGATTTGTCGTGATGCCAATACAATATCATGACATTTGGGAGTTCTATAAGAAAGCTGTC 2909 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 |||||||||||||| || || || || ||| | | | || | | |||||| ||||| Sbjct 2908 GCTTCTTTTTGGACGGTTGAGGAGGTTGATTTAGCGAAGGATCTTACCGATTGGGAAAAT 2849 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 | || | ||| || ||||| || ||| |||| || || ||||||| |||||| Sbjct 2848 CTCAATGATGGTGAACGACACTTTATTTCGTATGTTCTGGCCTTCTTTGCAGCGAGTGAT 2789 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939 || ||||||||||||||| || ||| || ||| | || || || ||||||| || Sbjct 2788 GGCATCGTTAACGAAAATTTAACCTTGAATTTTTGTAACGAAGTTCAAGTTCCTGAGGCT 2729 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 | |||||||| ||| | || | || | || || |||||||| || ||||| ||| Sbjct 2728 CGTTGTTTTTATGGAATGCAAGTGGCCGTTGAGAACATTCATTCTGAAATGTATTCTCTT 2669 Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT----CTAT 269055 | || ||||| ||| | | | || | | || || | ||| || | || Sbjct 2668 CTGATCGATACATATGTCAAGG---ACCCGGCAGAG-CGTGATTTTTTATTTAACGCCAT 2613 Query 269056 GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGA 269112 ||| || || || || || | || ||||| || || ||||| || | Sbjct 2612 TCAAACGCTGCCATGCGTCGCTAAGAAGGCGGATTGGGCACTTAAGTGGATCGCGAATAA 2553 Query 269113 TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 || || | |||| || | | || ||||| || ||| | || ||| | ||||| || Sbjct 2552 GAGGGCATCGTACGCTGAGCGTGTGGTGGCTTTCGCTGCTATTGAGGGTGTTTTCTTCTC 2493 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232 || || ||||| |||| |||||| | ||||| | || || ||||| || | || || Sbjct 2492 CGGTTCGTTTGCTTCTATTTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTTACCTT 2433 Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATT 269292 | |||||| |||| || | || ||||| | ||| |||||| || ||| || ||| Sbjct 2432 CAGTAACGAGCTGATCAGTCGCGATGAAGGCCTTCACACCGACTTTGCGTGTCTA--ATT 2375 Query 269293 TACTAATTATCTT-TCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCA- 269350 | | || | || ||| | |||||| | ||| ||||| || || ||||| || | Sbjct 2374 TTC-AAGCACATTGTCA-ATAAACCTACAGCAGAAAGAGTGTATGACATTAT-GACGGAG 2318 Query 269351 GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATG 269410 || || ||||| ||||| || || || || || || ||||||||||||| ||| Sbjct 2317 GCCGTCAGCATAGAATGTGAATTCCTCACAGATGCCTTACCTGTCGATCTTATCGGCATG 2258 Query 269411 AAT 269413 ||| Sbjct 2257 AAT 2255 >seq210 Length=64943 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||| || ||||| | |||||| || | ||||| ||| Sbjct 42368 GTTGACTCCTTTTGAATGTTGTAGTCCGACAGAGTGCGACCGTCCTCCAACTGTTTACCA 42309 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| || || || || || || || ||||||||||| || || Sbjct 42308 GCAAAGATGAGACGTTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 42249 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| |||| | ||| || || || ||||| || ||||| ||||| |||||||| ||| Sbjct 42248 ACATTCTCTATCGAATCACTCGGCTCCACCTCCAGGGTAATCGTCTTGCCAGTAAGAGTT 42189 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 42188 TTGACGAAGATTTGCAT 42172 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || || ||||| || |||||||| ||||| | ||| || Sbjct 30386 AAGCACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGTGCGACCATC 30445 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || ||||| || | | ||| || || || || || || || || || Sbjct 30446 TTCCAGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTC 30505 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| |||| | || || || || ||||| | |||||||| Sbjct 30506 TTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTAATAGT 30565 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || ||||| || || |||||||| ||||| Sbjct 30566 CTTCCCCGTAAGCGTCTTCACAAATATTTGCAT 30598 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| || || ||||| ||||| || ||||| | ||| || Sbjct 30842 AAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATC 30901 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || || || || |||| | ||| ||||| || || || || || || || Sbjct 30902 TTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTC 30961 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || |||||||| || | || ||| || || || || || || |||||||| Sbjct 30962 TTGAATCTTAGCCTTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAATAGT 31021 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || ||||| || ||||| Sbjct 31022 CTTCCCCGTTAGCGTCTTCACAAAGATTTGCAT 31054 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| || || || ||||| ||||| || |||||||| ||||| | ||| || Sbjct 39466 AAGCACCAAATGCAAAGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATC 39407 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| ||||| || | | |||||| || || || || || || || || Sbjct 39406 TTCCAACTGCTTTCCTGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTC 39347 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | | || || || || ||||| | ||||||||| Sbjct 39346 TTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTTGGCTCCACCTCCAATGTAATAGT 39287 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | ||||| ||||| || ||||| Sbjct 39286 CTTGCCCGTCAACGTTTTCACAAAGATTTGCAT 39254 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 ||||| |||||||| | || | || ||||| | || || || || || |||| | | Sbjct 40347 ATATTGTAGTCAGACAAGGTGCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGC 40288 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || || || || || || || || || || |||||||| || || ||||| |||| | Sbjct 40287 TGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAG 40228 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || || || ||||| | ||||||||||| || ||||| || || |||||||| ||| Sbjct 40227 TCACTCGGCTCCACCTCCAAGGTAATAGTCTTCCCCGTAAGCGTCTTCACAAATATTTGC 40168 Query 104558 AT 104559 || Sbjct 40167 AT 40166 >seq10174 Length=1708 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||||||||| ||||| || | | | || || Sbjct 1055 AAGCACAAGATGAAGCGTTGACTCCTTCTGAATATTGTAGTCGGACAAGGACCGCCCATC 1114 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| ||| || ||||||||||| || | ||| || || ||||| || || || || || Sbjct 1115 TTCTAATTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 1174 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| ||||| || ||||| || | | || |||||| ||||| || || || || Sbjct 1175 TTGAATTTTTGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAACCTCAAGGGTGATGGT 1234 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| ||||| |||||||| Sbjct 1235 CTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 1267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150954488781428