Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq210 104 2e-17 seq10174 87.8 2e-12 >seq210 Length=64943 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| |||||||| || |||||||| || ||||| || | || | || || | || | Sbjct 39919 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTG-CGACCATCTT 39861 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| |||||||||| || | |||||||||||||||||| ||| | | |||||||| Sbjct 39860 CCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTT 39801 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| ||| ||| | | | | |||| ||| | | |||| ||| | ||| || || | Sbjct 39800 GAATCTTCGCCTTCACATTCTCAATGGAATCACTGGGCTCCACCTCCAGTGTAATTGTCT 39741 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| || ||||| Sbjct 39740 TGCCAGTTAGCGTCTTCACAAATATTTGCAT 39710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| | | ||| |||||||| || |||||||||||||||||| || | | Sbjct 42398 CCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAC 42339 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || ||||||||| ||| ||||| | | || | ||| || || ||| || Sbjct 42338 AGAGTG-CGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGG 42280 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| ||| ||| | | | |||| | ||| | | |||| Sbjct 42279 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTCCAC 42220 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || || || |||||||| || || || |||||| Sbjct 42219 CTCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCATC 42171 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | ||| || || |||||||||||||||||| |||| || | || || | || | Sbjct 30389 CACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGTG-CGACCATCTT 30447 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||||||||||||| | | || ||||||||||| ||| || | | |||||||| Sbjct 30448 CCAGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTT 30507 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| ||| ||| | | | |||| | || | | |||| ||| | || || || | Sbjct 30508 GAATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTAATAGTCT 30567 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| || ||||| Sbjct 30568 TCCCCGTAAGCGTCTTCACAAATATTTGCAT 30598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| |||||||| || |||||||| || ||||| || | || | || || | || | Sbjct 30845 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTG-CGACCATCTT 30903 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| |||||||||| || | |||||||||||||||||| ||| | | |||||||| Sbjct 30904 CCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTT 30963 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | | |||| ||| | | ||| || | || || || | Sbjct 30964 GAATCTTAGCCTTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAATAGTCT 31023 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| || ||||| Sbjct 31024 TCCCCGTTAGCGTCTTCACAAAGATTTGCAT 31054 >seq10174 Length=1708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| ||||| ||||| || | ||| ||| | || || Sbjct 1058 CACAAGATGAAGCGTTGACTCCTTCTGAATATTGTAGTCGGACAAGGACCGCCCATCTTC 1117 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 | ||||| || | |||| | ||||||||| ||| || | || |||||||| Sbjct 1118 TAATTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTG 1177 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | | | || | || | || || ||| | || ||||| || Sbjct 1178 AATTTTTGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAACCTCAAGGGTGATGGTCTT 1237 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||||||||| ||||||||||||||| Sbjct 1238 GCCGGTGAGAGTTTTGACAAAAATCTGCATC 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421096712836091