Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2251 125 6e-24 seq210 91.5 1e-13 seq10174 86.0 6e-12 >seq2251 Length=6394 Score = 125 bits (138), Expect = 6e-24 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||||| | || ||| || | || | || ||||||||||| | ||| || ||| Sbjct 1231 TCCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCG-- 1174 Query 94840 CATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || ||| | |||||||| ||| || ||| ||||||| | || |||||| ||||| Sbjct 1173 GAGAGAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGGT 1114 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TC 94956 || || || || ||||| | |||||| || |||||| | | || ||| || || || Sbjct 1113 GGTATGCCCTCCTTGTCTTGAATTTTCGCTTTGACGTTCTCAATAGAGTC-GCTAGGCTC 1055 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 1054 AACCTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCAT 1004 >seq210 Length=64943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||| ||| |||| |||||| || | || || |||||||| | ||| | Sbjct 42406 TTTGCATGCCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGT 42347 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || |||| ||||||| |||||| || ||||||| | | ||| || | Sbjct 42346 AGTCCGACAGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGT 42287 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||||| || || ||||| | ||| || ||||| || | | | ||| Sbjct 42286 CCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCG 42227 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || |||||||||||||| || ||||| ||||| Sbjct 42226 GCTCCACCTCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCAT 42172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| | |||||| || | || ||||||||||| | || || ||| || |||| Sbjct 39925 TCGAAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACC 39866 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || ||| | |||||||| | |||||||| || || || || || || Sbjct 39865 ATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTT 39806 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | | ||| | | || || || | || || Sbjct 39805 GTCTTGAATCTTCGCCTTCACATTCTCAATGGAATCACTGGGCTCCACCTCCAGTGTAAT 39746 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || |||||||| || ||||||| Sbjct 39745 TGTCTTGCCAGTTAGCGTCTTCACAAATATTTGCATGC 39708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| | |||||| || | || ||||||||||| | || || ||| || |||| Sbjct 30839 TCGAAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACC 30898 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || ||| | |||||||| | |||||||| || || || || || || Sbjct 30899 ATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTT 30958 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | | ||| | | || || || | || || Sbjct 30959 GTCTTGAATCTTAGCCTTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAAT 31018 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||||||||| |||||| Sbjct 31019 AGTCTTCCCCGTTAGCGTCTTCACAAAGATTTGCATG 31055 >seq10174 Length=1708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || ||||| ||||| || ||||| | |||||||||||| || | | || | Sbjct 1146 TGCTGGTCCGGAGGGATACCCTCCTTGTCTTGAATTTTTGCCTTCACATTCTCAATAGAG 1205 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | || || |||| |||||||| || || || |||||||| ||||| |||||| Sbjct 1206 TCAGAAGGTTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGC 1265 Query 95006 AT 95007 || Sbjct 1266 AT 1267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448122580868760