Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09-
25] 30,091 sequences; 103,664,560 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq894 163 4e-36
seq3815 132 8e-27
seq848 131 3e-26
>seq894
Length=16688
Score = 163 bits (180), Expect = 4e-36
Identities = 180/240 (75%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| |||||||| ||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct 9361 TCTTCGTGATAACATTCAAGGGATAACTAAGCCTGCTATTCGTCGTCTTGCTCGTCGCGG 9420
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || ||||| | ||||| | |||| || |||| ||| | ||| | ||| ||||
Sbjct 9421 CGGCGTGAAGCGCATTTCTGGTCTTATCTACGAGGAGACTCGGGGTGTACTTAAGGTCTT 9480
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | ||| ||| || | ||||||| || || ||||||||||| ||||| || |||||
Sbjct 9481 CTTAGAGAACGTCATTCGTGATGCTGTCACGTACACCGAGCACGCAAAACGCAAAACTGT 9540
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| | ||||| | ||||| || |||| || ||||| || | | | |||||||| ||
Sbjct 9541 CACGGCTATGGACGTGGTCTACGCGCTGAAGCGCCAAGGACGCACGCTCTATGGTTTCGG 9600
>seq3815
Length=4078
Score = 132 bits (146), Expect = 8e-27
Identities = 186/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| | | || || || ||||| || || ||||| || || || ||
Sbjct 1883 CGCTAAGCGTCACAGGAAGGTGCTGCGTGACAACATTCAGGGCATCACAAAACCCGCCAT 1824
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| | || || ||||| ||||| ||||| |||| || ||| |||| || ||||
Sbjct 1823 TCGACGTTTAGCGCGCCGTGGCGGAGTAAAGCGGATCTCGGGTTTGATCTACGAGGAGAC 1764
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||| | | | ||| || | ||| || | || || ||
Sbjct 1763 TCGAGGAGTGCTGAAGGTGTTCTTGGAAAACGTCATTCGTGACGCCGTTACGTACACTGA 1704
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || |||||||| ||| ||||||| | || ||||| ||||||| || ||
Sbjct 1703 GCACGCAAAGCGCAAGACTGTGACCGCCATGGACGTGGTTTATGCTCTGAAACGCCAGGG 1644
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||||| ||||||| |||||
Sbjct 1643 CCGTACCCTTTATGGCTTTGG 1623
>seq848
Length=17601
Score = 131 bits (144), Expect = 3e-26
Identities = 178/246 (72%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || ||||||||||| || || |||||||| || || ||| |||| |||||||||
Sbjct 16612 CTGCGTGACAACATCCAAGGCATTACAAAGCCAGCGATTCGACGTTTGGCACGTCGTGGT 16553
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || || || |||||||| | |||| || |||| || | ||| | ||| | ||
Sbjct 16552 GGTGTTAAACGCATCTCTGGACTTATCTACGAGGAGACACGCGTTGTGCTTAAGGTGTTT 16493
Query 16574 CTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| || ||||||| || || || || || || || ||||| | ||| ||||| ||
Sbjct 16492 CTCGAGGATGTTATCCGAGACGCAGTTGCA-TACACTGAACACGCAAGACGCAAGACGGT 16434
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| | ||||| ||||||| || | ||||| || || |||| || || || |||||
Sbjct 16433 CACTGCTTTGGATGTCGTCTACGCCCTCAAACGCCATGGTCGTACCATCTACGGATTTGG 16374
Query 16693 AAGTTA 16698
||||
Sbjct 16373 TGGTTA 16368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79047687588063
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |