Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq894 163 4e-36 seq3815 132 8e-27 seq848 131 3e-26 >seq894 Length=16688 Score = 163 bits (180), Expect = 4e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| ||||| || || ||||| ||||| |||||||| |||||||| || Sbjct 9361 TCTTCGTGATAACATTCAAGGGATAACTAAGCCTGCTATTCGTCGTCTTGCTCGTCGCGG 9420 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| | ||||| | |||| || |||| ||| | ||| | ||| |||| Sbjct 9421 CGGCGTGAAGCGCATTTCTGGTCTTATCTACGAGGAGACTCGGGGTGTACTTAAGGTCTT 9480 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| || | ||||||| || || ||||||||||| ||||| || ||||| Sbjct 9481 CTTAGAGAACGTCATTCGTGATGCTGTCACGTACACCGAGCACGCAAAACGCAAAACTGT 9540 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| | ||||| || |||| || ||||| || | | | |||||||| || Sbjct 9541 CACGGCTATGGACGTGGTCTACGCGCTGAAGCGCCAAGGACGCACGCTCTATGGTTTCGG 9600 >seq3815 Length=4078 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| | | || || || ||||| || || ||||| || || || || Sbjct 1883 CGCTAAGCGTCACAGGAAGGTGCTGCGTGACAACATTCAGGGCATCACAAAACCCGCCAT 1824 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | || || ||||| ||||| ||||| |||| || ||| |||| || |||| Sbjct 1823 TCGACGTTTAGCGCGCCGTGGCGGAGTAAAGCGGATCTCGGGTTTGATCTACGAGGAGAC 1764 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||| | | | ||| || | ||| || | || || || Sbjct 1763 TCGAGGAGTGCTGAAGGTGTTCTTGGAAAACGTCATTCGTGACGCCGTTACGTACACTGA 1704 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| ||| ||||||| | || ||||| ||||||| || || Sbjct 1703 GCACGCAAAGCGCAAGACTGTGACCGCCATGGACGTGGTTTATGCTCTGAAACGCCAGGG 1644 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| ||||||| ||||| Sbjct 1643 CCGTACCCTTTATGGCTTTGG 1623 >seq848 Length=17601 Score = 131 bits (144), Expect = 3e-26 Identities = 178/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| || || |||||||| || || ||| |||| ||||||||| Sbjct 16612 CTGCGTGACAACATCCAAGGCATTACAAAGCCAGCGATTCGACGTTTGGCACGTCGTGGT 16553 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || |||||||| | |||| || |||| || | ||| | ||| | || Sbjct 16552 GGTGTTAAACGCATCTCTGGACTTATCTACGAGGAGACACGCGTTGTGCTTAAGGTGTTT 16493 Query 16574 CTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| || ||||||| || || || || || || || ||||| | ||| ||||| || Sbjct 16492 CTCGAGGATGTTATCCGAGACGCAGTTGCA-TACACTGAACACGCAAGACGCAAGACGGT 16434 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| ||||||| || | ||||| || || |||| || || || ||||| Sbjct 16433 CACTGCTTTGGATGTCGTCTACGCCCTCAAACGCCATGGTCGTACCATCTACGGATTTGG 16374 Query 16693 AAGTTA 16698 |||| Sbjct 16373 TGGTTA 16368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79047687588063