Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq210 125 5e-24 seq10174 100 2e-16 seq30086 98.7 7e-16 seq22061 89.7 3e-13 >seq210 Length=64943 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| |||||||| |||||||||||| || |||||||||||| ||||| || ||| Sbjct 42398 CCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAC 42339 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || || ||||| || ||||| || || |||||||| || | || Sbjct 42338 AGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGA 42279 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| || ||||||||||| | | ||| | || || Sbjct 42278 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTCCACC 42219 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 42218 TCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCAT 42172 Score = 105 bits (116), Expect = 4e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||||||| | ||| ||| |||||||| ||||| ||||||| | ||| | || || Sbjct 39463 CACCAAATGCAAAGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATCTTC 39404 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || ||||| ||||| || | || ||||| || | || | ||| || ||||| Sbjct 39403 CAACTGCTTTCCTGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 39344 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGT 38284 || || ||||||||||| || | ||||| || || || ||||||||||| Sbjct 39343 GATCTTCGCCTTCACATTCT---CAATCGAGTCACTTGGCTCCACCTCCAATGTAATAGT 39287 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| |||||||| || || ||||| Sbjct 39286 CTTGCCCGTCAACGTTTTCACAAAGATTTGCAT 39254 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||||||| | ||| ||||||||| |||||||| |||||||| ||| | || || Sbjct 30617 CACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTC 30676 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || ||||| || |||| || ||||| || | || | ||| || ||||| Sbjct 30677 CAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 30736 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGT 38284 || || ||||||||||| | | | ||||| || || || || ||||| || Sbjct 30737 GATCTTCGCCTTCACATTCTCTATCGAGT---CACTTGGCTCCACCTCCAAGGTAATCGT 30793 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| || ||||| ||||| |||||| Sbjct 30794 CTTGCCAGTCAACGTCTTCACAAATATTTGCATG 30827 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||||||| | ||| ||||||||| |||||||| |||||||| ||| | || || Sbjct 40147 CACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTC 40088 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || ||||| || |||| || ||||| || | || | ||| || ||||| Sbjct 40087 CAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 40028 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGT 38284 || || ||||||||||| | | | ||||| || || || || ||||| || Sbjct 40027 GATCTTCGCCTTCACATTCTCTATCGAGT---CACTTGGCTCCACCTCCAAGGTAATCGT 39971 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| || ||||| ||||| |||||| Sbjct 39970 CTTGCCAGTCAACGTCTTCACAAATATTTGCATG 39937 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||||||||| || |||||||| |||||||| || |||| | || | || || Sbjct 30845 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 30904 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || ||||| || |||| || || ||||| | |||| ||| || ||||| Sbjct 30905 CAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTG 30964 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||||| | | ||| | |||||||| | |||||||| || Sbjct 30965 AATCTTAGCCTTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAATAGTCTT 31024 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| | || ||||| || || |||||| Sbjct 31025 CCCCGTTAGCGTCTTCACAAAGATTTGCATG 31055 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||||||||||||| ||||||||| |||||||| || |||| | || | || || Sbjct 39691 CACCAAATGAAGAGTCGACTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 39632 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || || |||||||| | || || || || | || | ||| || ||||| Sbjct 39631 CAACTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 39572 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGT 38284 ||||| ||||||||||| | | | ||||| || || || || ||||| || Sbjct 39571 GATTTTCGCCTTCACATTCTCTATCGAGT---CACTTGGCTCCACCTCCAAGGTAATCGT 39515 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || |||| || ||||| ||||| |||||| Sbjct 39514 CTTGCCAGTCAGCGTCTTCACAAATATTTGCATG 39481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||||||||| || |||||||| |||||||| || |||| | || | || || Sbjct 39919 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 39860 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || ||||| || |||| || || ||||| | |||| ||| || ||||| Sbjct 39859 CAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTG 39800 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||||||||||| | | ||| | || || || | |||||| || || Sbjct 39799 AATCTTCGCCTTCACATTCTCAATGGAATCACTGGGCTCCACCTCCAGTGTAATTGTCTT 39740 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || ||||| ||||| |||||| Sbjct 39739 GCCAGTTAGCGTCTTCACAAATATTTGCATG 39709 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | ||| ||||| |||||||||||| ||||| ||||||| | || | Sbjct 30383 ACGAAGCACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGTGCGACC 30442 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || || |||||||| | || || || || | || | ||| || || Sbjct 30443 ATCTTCCAGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTT 30502 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAACTTCTAATGTA 38279 ||| ||| || ||||||||||| | ||| ||| | || || || || ||| Sbjct 30503 GTCTTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGC--TCCACCTCCAAGGTA 30560 Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || ||||| | || ||||| ||||| |||||| Sbjct 30561 ATAGTCTTCCCCGTAAGCGTCTTCACAAATATTTGCATG 30599 >seq10174 Length=1708 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| | |||||| || |||||| ||||||||||| || || Sbjct 1040 ACCACCACGAAGACGAAGCACAAGATGAAGCGTTGACTCCTTCTGAATATTGTAGTCGGA 1099 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| || | || |||||||| || || ||||| || || || || || || | || Sbjct 1100 CAAGGACCGCCCATCTTCTAATTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGG 1159 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || ||||| ||||||| ||||||||||| | || || | |||||| Sbjct 1160 GATACCCTCCTTGTCTTGAATTTTTGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAAC 1219 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | ||||| || || |||||||| Sbjct 1220 CTCAAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 1267 >seq30086 Length=500 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||||||| | ||| ||||||||| |||||||| |||||||| ||| | || || Sbjct 147 CACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTC 206 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || ||||| || |||| || ||||| || | || | ||| || ||||| Sbjct 207 CAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 266 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGT 38284 || || ||||||||||| | | | ||||| || || || || ||||| || Sbjct 267 GATCTTCGCCTTCACATTCTCTATCGAGT---CACTTGGCTCCACCTCCAAGGTAATCGT 323 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| || ||||| ||||| |||||| Sbjct 324 CTTGCCAGTCAACGTCTTCACAAATATTTGCATG 357 >seq22061 Length=726 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 5/72 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| |||||||||||||||||||||||||||||||||| | |||||||| Sbjct 655 AAGCCCGTTGCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 714 Query 25957 TAATCCTTTCAT 25968 |||||| ||||| Sbjct 715 TAATCCATTCAT 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334824363452621