Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10174 134 1e-26 seq210 131 1e-25 seq2251 123 2e-23 seq30086 116 3e-21 >seq10174 Length=1708 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| || ||||||| | || || || | ||| Sbjct 1267 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAACCTTCT 1208 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| ||| ||||| |||||| ||| ||||| || || || || || ||||| Sbjct 1207 GACTCTATTGAGAATGTGAAGGCAAAAATTCAA-GACAAGGAGGGTATCCCTCCGGACCA 1149 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||||||||| ||||| ||||||||||||| || | || ||| ||||| Sbjct 1148 GCAGCGTCTTATTTTTGCTGGCAAGCAATTAGAAGATGGGCGGTCCTTGTCCGACTACAA 1089 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || ||||| ||| | ||||| Sbjct 1088 TATTCAGAAGGAGTCAACGCTTCATCTTGTGCT 1056 >seq210 Length=64943 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| |||| || || | || || | || |||||| | | Sbjct 39482 ATGCAAATATTTGTGAAGACGCTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAGT 39541 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| |||||| ||||| || || |||||||| ||||| Sbjct 39542 GACTCGATAGAGAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATTCCACCGGACCAG 39601 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || || ||||||| ||||||| || ||| |||||| Sbjct 39602 CAGCGTTTGATATTTGCGGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAT 39661 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || ||||| ||||| Sbjct 39662 ATACAAAAGGAGTCGACTCTTCATTTGGTGCT 39693 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || || | || ||| | || |||||| | | Sbjct 39254 ATGCAAATCTTTGTGAAAACGTTGACGGGCAAGACTATTACATTGGAGGTGGAGCCAAGT 39313 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| ||||| || || |||||||| |||||| Sbjct 39314 GACTCGATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAA 39373 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || || ||||||| ||| ||| || || ||||| Sbjct 39374 CAGCGTTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACTCTGTCTGACTACAAC 39433 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || || | ||||| ||||| Sbjct 39434 ATTCAAAAAGAGTCAACTTTGCATTTGGTGCT 39465 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || |||||| | | Sbjct 30826 ATGCAAATATTTGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAGT 30767 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| ||||| || || |||||||| |||||| Sbjct 30766 GACTCGATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAA 30707 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || || ||||||| ||||| || || |||||| Sbjct 30706 CAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGACGCACCTTGTCTGACTACAAT 30647 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || | ||||| ||||| Sbjct 30646 ATACAAAAGGAGTCGACTTTGCATTTGGTGCT 30615 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || |||||| | | Sbjct 39938 ATGCAAATATTTGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAGT 39997 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| ||||| || || |||||||| |||||| Sbjct 39998 GACTCGATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAA 40057 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || || ||||||| ||||| || || |||||| Sbjct 40058 CAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGACGCACCTTGTCTGACTACAAT 40117 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || | ||||| ||||| Sbjct 40118 ATACAAAAGGAGTCGACTTTGCATTTGGTGCT 40149 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || | || || | || |||||| || | Sbjct 30598 ATGCAAATATTTGTGAAGACGCTTACGGGGAAGACTATTACCTTGGAGGTGGAGCCGAGT 30539 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| |||| || || | ||| ||||| || || |||||||| ||||| Sbjct 30538 GACTCGATAGAGAATGTGAAGGCGAAGATTCA-AGACAAGGAGGGCATTCCACCGGACCA 30480 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | ||||||| ||||||| || || ||||| Sbjct 30479 GCAGCGTTTGATATTTGCGGGTAAGCAGCTGGAAGATGGTCGCACTCTGTCTGACTACAA 30420 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || ||| | ||||| Sbjct 30419 CATTCAAAAGGAGTCAACTCTGCATCTTGTGCT 30387 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || | || ||| | || |||||| | | Sbjct 39710 ATGCAAATATTTGTGAAGACGCTAACTGGCAAGACAATTACACTGGAGGTGGAGCCCAGT 39769 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | || ||| |||| || || | ||| ||||| || || || || || || || Sbjct 39770 GATTCCATTGAGAATGTGAAGGCGAAGATTCA-AGACAAGGAGGGCATCCCGCCGGATCA 39828 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || || ||||||| ||||||| || ||| ||||| Sbjct 39829 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 39888 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||||| || || ||||| ||||| Sbjct 39889 TATACAAAAGGAATCGACCCTTCATTTGGTGCT 39921 Score = 89.7 bits (98), Expect = 4e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || | || || | || |||||| || | Sbjct 40166 ATGCAAATATTTGTGAAGACGCTTACGGGGAAGACTATTACCTTGGAGGTGGAGCCGAGT 40225 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| |||| || || | ||| ||||| || || |||||||| ||||| Sbjct 40226 GACTCGATAGAGAATGTGAAGGCGAAGATTCA-AGACAAGGAGGGCATTCCACCGGACCA 40284 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || || ||||||| ||||| || || ||||| Sbjct 40285 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGACGCACCTTGTCTGACTACAA 40344 Query 25178 TAT 25180 ||| Sbjct 40345 TAT 40347 >seq2251 Length=6394 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || | || || ||| ||||||| | || || ||| | Sbjct 1003 AATGCAAATTTTTGTTAAAACCCTTACTGGGAAAACCATCACTCTTGAGGTTGAGCCTAG 1062 Query 25058 TGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| |||| ||| ||| |||| |||| ||| ||||| || || || ||||| | Sbjct 1063 CGACTCTATTGAGAACGTCA---AAGCGAAAATTCAA-GACAAGGAGGGCATACCACCAG 1118 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| || || |||| ||||||||||| || || || |||| || ||| | ||| | Sbjct 1119 ACCAGCAACGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGGCGAACTCTCTCCGACT 1178 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| |||||||| ||||| ||||| ||| | || | || ||| ||||||||| Sbjct 1179 ACAACATTCAAAAGGAATCGACGCTCCATCTTGTTTTGAGACTACGAGGAGGAA 1232 >seq30086 Length=500 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || |||||| | | Sbjct 356 ATGCAAATATTTGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAGT 297 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| ||||| || || |||||||| |||||| Sbjct 296 GACTCGATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAA 237 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || || ||||||| ||||| || || |||||| Sbjct 236 CAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGACGCACCTTGTCTGACTACAAT 177 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || | ||||| ||||| Sbjct 176 ATACAAAAGGAGTCGACTTTGCATTTGGTGCT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433169083862165