Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq210 102 7e-17 seq2251 95.1 1e-14 seq10174 86.0 5e-12 >seq210 Length=64943 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || ||| | || || || || ||||| ||||| || ||||| Sbjct 31054 ATGCAAATCTTTGTGAAGACGCTAACGGGGAAGACTATTACTCTGGAAGTTGAGCCCAGT 30995 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 ||||| ||| | ||||| || ||| ||||| || ||| | |||| || |||| Sbjct 30994 GATTCCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCAT-CCCGCCGGATCA 30936 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | || | || || || || ||||||||| | ||| || |||| || || Sbjct 30935 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 30876 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||||||||| ||||| || || ||||| ||| | || || || ||||||| Sbjct 30875 TATACAAAAGGAATCGACCCTTCATTTGGTGCTTCGACTTCGTGGTGGCA 30826 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || ||| | || ||||| || ||||| |||| ||| ||||| Sbjct 39710 ATGCAAATATTTGTGAAGACGCTAACTGGCAAGACAATTACACTGGAGGTGGAGCCCAGT 39769 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 ||||| ||| | || || || ||| ||||| || ||| | |||| || |||| Sbjct 39770 GATTCCATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCAT-CCCGCCGGATCA 39828 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | || | || || || || ||||||||| | ||| || |||| || || Sbjct 39829 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 39888 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||||||||| ||||| || || ||||| ||| | || || || ||||||| Sbjct 39889 TATACAAAAGGAATCGACCCTTCATTTGGTGCTTCGACTTCGTGGTGGCA 39938 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || ||| |||| ||||| || |||||| |||| ||| || || Sbjct 39482 ATGCAAATATTTGTGAAGACGCTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAGT 39541 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || || ||||| ||||| || ||| |||| || || Sbjct 39542 GACTCGATAGAGAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATTCCACCGGACCAG 39601 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | || | |||||| || || ||||||||| | ||| || |||| || ||| Sbjct 39602 CAGCGTTTGATATTTGCGGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAT 39661 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||||||| || || || || ||||| ||| | || || || ||||||| Sbjct 39662 ATACAAAAGGAGTCGACTCTTCATTTGGTGCTCCGACTTCGTGGTGGCA 39710 >seq2251 Length=6394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||||||||| ||||| | || || |||||||| || | || || || Sbjct 1001 AAAATGCAAATTTTTGTTAAAACCCTTACTGGGAAAACCATCACTCTTGAGGTTGAGCCT 1060 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||||| ||| ||| | || ||| |||||| ||||| || ||| | || || Sbjct 1061 AGCGACTCTATTGAGAACGTCAAAGCGAAAATTCAAGACAAGGAGGGCATACCACCAGAC 1120 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || ||| | ||||| | ||| ||||| || ||||| ||| |||| | |||| || Sbjct 1121 CAGCAACGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGGCGAACTCTCTCCGACTAC 1180 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| ||||| || || ||| | || ||| | || || || || Sbjct 1181 AACATTCAAAAGGAATCGACGCTCCATCTTGTTTTGAGACTACGAGGAGG 1230 >seq10174 Length=1708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||||||||| | |||||||| ||||| ||| | || ||||| Sbjct 1267 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAACCTTCT 1208 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| ||| | || || ||||||| ||||| || || | || || || Sbjct 1207 GACTCTATTGAGAATGTGAAGGCAAAAATTCAAGACAAGGAGGGTATCCCTCCGGACCAG 1148 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||||| ||| ||||| ||||| |||||| | || |||| || ||| Sbjct 1147 CAGCGTCTTATTTTTGCTGGCAAGCAATTAGAAGATGGGCGGTCCTTGTCCGACTACAAT 1088 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || ||| | ||| | ||||| || ||||| Sbjct 1087 ATTCAGAAGGAGTCAACGCTTCATCTTGTGCTTCGTCTTCGTGGTGG 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422884856822200