Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4951 131 3e-25 seq4589 102 2e-16 >seq4951 Length=3275 Score = 131 bits (144), Expect = 3e-25 Identities = 268/394 (68%), Gaps = 16/394 (4%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 ||||||| |||||| || ||||||||||| || || |||| || || || | | | Sbjct 1773 ACCCTCTTCATGAACAGATCGGGGATCCAAAGCGCGAGGAAAAGATCTCTTGCACGAATC 1832 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || | |||||||||||||| || |||| ||| | | || || ||||| ||| Sbjct 1833 TCCTCAGCGCCAGTGTTCTTCCGCAATTCCACAAATTGCAGTACATCTGGATGCCATGGC 1892 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCG 245182 || | ||||||||||| |||||| || || ||||| || || ||||| | | | || Sbjct 1893 TCAAGGTAGACAGCGAAGGCGCCAGGTCGTTTGTTCCCACCTTGGTCTA----CATAACG 1948 Query 245183 AGC---GC-GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCC 245238 ||| || |||||||| ||||| | || || | || || || | || |||||||| Sbjct 1949 AGCAGTGCTGTTGAAGACTCGCAGCATCGGTACAAGACCATTCGACTCCCCATTGGTGCC 2008 Query 245239 CTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGG 245294 |||| | | |||||| | || | | | ||| |||| || | || || | Sbjct 2009 GGCGATGAACGTGCCCTTACTCC---GAATAC-AATGAACATTGAGACCGATCCCACCCG 2064 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 | |||||||| ||||| || |||| ||||| ||||||||| || ||||| Sbjct 2065 CACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCCTCAATACTGTCAT 2124 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG 245388 |||||| ||| || ||||||| |||| ||| Sbjct 2125 CCTTCATCGTGACCAAAAAGCAGCTAGACATCTG 2158 >seq4589 Length=3505 Score = 102 bits (112), Expect = 2e-16 Identities = 239/358 (67%), Gaps = 2/358 (1%) Strand=Plus/Minus Query 42500 TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTA 42559 |||||| || || || || || | || | ||| | |||||| | || ||||| |||| Sbjct 2735 TGAGGCTCGTTGTTTTTATGGAATGCAAGTGGCCGTTGAGAACATTCATTCTGAAATGTA 2676 Query 42560 CGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGC 42619 | ||| || | || || || ||| || | |||||| | | || || || Sbjct 2675 TTCTCTTCTGATCGATACATATGTCAAGGACCCGGCAGAGCGTGATTTTTTATTTAACGC 2616 Query 42620 CATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAG 42679 ||| | ||| |||| ||| || ||||||||||| ||||| || || ||||||| || Sbjct 2615 CATTCAAACGCTGCCATGCGTCGCTAAGAAGGCGGATTGGGCACTTAAGTGGATCGCGAA 2556 Query 42680 TCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTT 42739 | ||| ||| || ||| | |||| || || | || | ||||| | ||||| Sbjct 2555 TAAGAGGGCATCGTACGCTGAGCGTGTGGTGGCTTTCGCTGCTATTGAGGGTGTTTTCTT 2496 Query 42740 CTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCA 42798 ||| || | || || || || || ||||||||| || ||| || ||||| || || | Sbjct 2495 CTCCGGTTCGTTTGCTTCTATTTTTTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGTCTTA 2437 Query 42799 CCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 ||||| ||||| || ||||| | || || || || || | |||||||| || || Sbjct 2436 CCTTCAGTAACGAGCTGATCAGTCGCGATGAAGGCCTTCACACCGACTTTGCGTGTCT 2379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943983998614160